Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023610.1 Length=218339 Score E Sequences producing significant alignments: (Bits) Value seq23186 125 1e-23 >seq23186 Length=554 Score = 125 bits (138), Expect = 1e-23 Identities = 207/296 (70%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 87574 GTGCGGCCACGCATATACGCGAAGGGAGCAATTTCCACCTTCTTCACATCCGGGCGCAAG 87633 || || || |||||||| ||||| || |||||||| ||||| | |||||||||| | Sbjct 553 GTACGTCCGCGCATATAGGCGAACGGCGCAATTTCTACCTTGCCGATTTCCGGGCGCAGG 494 Query 87634 CAGTACTGAAGGAACGTACCACCAAGGCGTTTCTCCAGGATGTCTTGAACCGGGCGGAAA 87693 |||||||| | || | | || | || ||| |||| | ||| | ||| || ||||| Sbjct 493 CAGTACTGCATAAAAGATGCGCCCAACCGCTTCACCAGCACGTCATAAACGGGCCGGAAG 434 Query 87694 TACGGGGCGAATTTCTCGCTGATGTCCCCAGGCAAGAAGCCCAGGTTCTCACCGGACTCT 87753 ||||| || || ||||| || || || ||||||||||| || | ||| ||| || Sbjct 433 TACGGCGCAAACTTCTCCGAAATATCACCGGGCAAGAAGCCGAGATCTTCATCGGCCTGC 374 Query 87754 AAGACAGGACGCGTCACGATGATGCGCTCCACCTCTTTATCCAGCAATGCTTTGGCCGCG 87813 || || || || || || ||||| || || ||||||| | ||| || | ||||| Sbjct 373 AATACCGGGCGAGTGACAATGATCTTATCGACGTCTTTATGAATCAAAGCCTCTGCCGCT 314 Query 87814 T--GC-GCAGTTGACAGGAATGTTTTACCACAACCGGCTTCACCCGTTGCAAAGAT 87866 | || ||| || | | ||||| ||||| ||||||||||| || || || || Sbjct 313 TTGGCTGCACTT---ATCCAGGTTTTCCCACACCCGGCTTCACCGGTGGCGAAAAT 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 698246474873560