Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023612.1 Length=39078 Score E Sequences producing significant alignments: (Bits) Value seq2111 87.8 4e-13 >seq2111 Length=5547 Score = 87.8 bits (96), Expect = 4e-13 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 35739 TTTCAATTCAACGTCACCGATGGAAAATTAAATTGTATGGTTTACCAACGCAGCGGAGAT 35798 ||||| || | || | ||||| |||||| || | | || ||| | |||| ||| Sbjct 3236 TTTCAGTTTTATGTAGCAGATGGCAAATTATCCTGCCAGTTATATCAAAGAAGCGCCGAT 3295 Query 35799 ATGTTTTTAGGGGTACCGTTTAACATCGCCGGTTATGCAGCTATAACCATGATGATTGCC 35858 || |||||||| || || |||||||| || ||||||| | || |||||||||| Sbjct 3296 ATCTTTTTAGGAGTGCCTTTTAACATAGCATCTTATGCATTATTGACATTGATGATTGCT 3355 Query 35859 CAATTAACCAATTTAGAGCCGGGCGAGCTTGTCCATGCTATCGCAGACGCGCACATTTAT 35918 || | | ||||| | ||||| || || ||||| || | | ||||||||||| ||| Sbjct 3356 CAGGTTTGCGATTTAAAACCGGGAGATTTTATCCATACTTTTGGTGACGCGCACATCTAT 3415 Query 35919 TTAAATCACATCGAGCAAGTAAAGGAACAATTAAGCCGCGAGCCGCGACCGCTGCC 35974 || || || || || || || ||| | |||||| ||| ||||||||| Sbjct 3416 AACAACCATATTGAACAGTTAGAGTTGCAACTTTCCCGCGACCCGAAACCGCTGCC 3471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124875277182720