Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq32362 105 7e-18 seq28136 89.7 5e-13 seq14623 89.7 5e-13 >seq32362 Length=298 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || | |||| ||||||||| || || ||||| |||||| | Sbjct 232 CCACCACGCAGACGCAAGACAAGGTGAAGTGTAGATTCCTTCTGGATGTTATAATCGGCC 173 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | | || || || |||||||||||| | || || | |||||||| || || Sbjct 172 AGAGTTCGCCCATCCTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGATCAGGTGGA 113 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| |||||| ||||| | || | ||| || | | || || Sbjct 112 ATCCCTTCCTTGTCCTGAATTTTCGCTTTTACGTTATCAATCGTATCGGAGCTCTCAACC 53 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | |||||||| ||||| || || || ||||| |||||| Sbjct 52 TCCAGTGTGATAGTCTTGCCTGTCAACGTCTTCACAAATATCTGCATA 5 >seq28136 Length=407 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 137273 || || ||||| || ||||||||||| || |||| || | ||||| | || || || Sbjct 208 GTTGACTCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCCA-TCTTCCAACTGCTTGCC 150 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 ||| | |||||||||||||| ||||| || || ||||||||||| ||||| || Sbjct 149 CGCAAATATCAGACGTTGCTGGTCGGGCGGGATCCCTTCTTTGTCCTGGATTTTGGCCTT 90 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | || || || ||| ||||| | || | |||||||| |||| || Sbjct 89 CACATTGTCGATTGTATCGCTGCTTTCAACTTCTAAGGTTATGGTCTTGCCCGTCAGGGT 30 Query 137394 TTTTACGAATATTTGCAT 137411 |||||||| || ||||| Sbjct 29 CTTTACGAAGATCTGCAT 12 >seq14623 Length=969 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| || || || ||||||||| | || | ||||| || || || ||| Sbjct 230 GTGGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCATCTTCCAGCTGCTTTCCA 171 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| | |||||||| || || || || || |||||||| || || |||||| ||| Sbjct 170 GCAAATATCAGACGCTGTTGGTCCGGGGGAATGCCTTCCTTATCCTGGATTTTTGCCTTT 111 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | || ||||||| ||| | ||||||||||| | ||| Sbjct 110 ACATTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATGGTCTTGCCGGTAAGAGTT 51 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| |||||||| Sbjct 50 TTGACGAAGATTTGCAT 34 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 137194 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 137253 ||||| | || | ||| | || ||||| ||||| || ||||| || || || | Sbjct 479 AAACGGAGGACGAGATGCAGGGTTGATTCCTTTTGAATATTGTAGTCTGCCAGGGTTCGG 420 Query 137254 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 137313 ||||||||| || || || ||| | |||||||||||||| || || || || ||||| Sbjct 419 CCGTCTTCGAGCTGCTTTCCGGCAAATATCAGACGTTGCTGGTCAGGCGGGATTCCTTCC 360 Query 137314 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTC 137373 ||||| || || ||||| | || | || || | | || ||||| | || Sbjct 359 TTGTCCTGGATCTTGGCTTTTACATTGTCAATGGTATCCGAGCTCTCAACTTCCAACGTT 300 Query 137374 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | |||||| || |||| ||||| ||||| || ||||| Sbjct 299 ATCGTCTTACCAGTCAGGGTTTTGACGAAGATCTGCAT 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488326970434800