Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq31592 93.3 6e-14 seq35409 87.8 3e-12 >seq31592 Length=318 Score = 93.3 bits (102), Expect = 6e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 97394 AGAAACTGGTAGCCATGGGCAGGATTGAACTGCCGACCCCACCCTTATCAGGGGTGTGCT 97453 ||| | |||| ||||||||||||| |||||||||||| | |||||| || ||| ||||| Sbjct 147 AGAGAATGGTGCCCATGGGCAGGATCGAACTGCCGACCTCTCCCTTACCAAGGGAGTGCT 206 Query 97454 CTACCACTGAGCTACATGG 97472 |||||||||||| |||||| Sbjct 207 CTACCACTGAGCCACATGG 225 >seq35409 Length=1007 Score = 87.8 bits (96), Expect = 3e-12 Identities = 69/80 (86%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 97400 TGGTAGCCATGGGCAGGATTGAACTGCCGACCCCACCCTTATCAGGGGTGTGCTCT-ACC 97458 |||||| | ||||||| | |||||||||||| ||||||||||||||||| ||||| ||| Sbjct 764 TGGTAGGCCTGGGCAGACTCGAACTGCCGACCTCACCCTTATCAGGGGTGCGCTCTAACC 823 Query 97459 A-CTGAGCTACATGGCTATA 97477 | |||||||||| | ||||| Sbjct 824 AGCTGAGCTACAGGCCTATA 843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709975662013040