Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq3270 257 2e-63 >seq3270 Length=3926 Score = 257 bits (284), Expect = 2e-63 Identities = 530/782 (68%), Gaps = 21/782 (3%) Strand=Plus/Minus Query 26009 TTAAAAGCAATCTCTTCCAGGCATGCAACCTTCATACCTTGTTGCTTCTCTATTGCATGA 26068 ||||| ||||| ||||| || |||||||| || ||||||| | || |||| || | | Sbjct 1790 TTAAAGGCAATTTCTTCTAGACATGCAACTTTATAACCTTGTCGTTTTTCTAATGTTTCA 1731 Query 26069 ACAAATTGAGATGCTTCCATAAGACTTTCATGTGTTCCTGTATCCAGCCAAGTGAAACCT 26128 |||||||| | |||||| | | || || || |||||||| | ||| | ||||| Sbjct 1730 ACAAATTGTGCTGCTTCTAACAAGCTACTATTAGTACCTGTATCTAACCATGCAAAACCA 1671 Query 26129 CTTCCTAGTT-TACAGACACGTAAAGTCTTTTCTTTCCAG-TACATCTCATTTATATCCG 26186 | || || | || ||| |||| || | || | ||||| | ||||| | Sbjct 1670 CGCCCAAGCAATTCA-ACATTTAAA-TCACCGCGCTCTAAATACATTTGATTTACTGTGG 1613 Query 26187 TAATCTCTAACTCCCCTCTAGCAGAAGGTTTAACGCTCTTAGCTTTCTGTATAACAGAAT 26246 |||| ||||| ||||| | | |||||||||| || | || || | || || ||| || Sbjct 1612 TAATTTCTAATTCCCCCCGATCAGAAGGTTTTACTTTTTTTGCAATTTGAATCACATCAT 1553 Query 26247 TATCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggtgtttttggtttttCTT 26306 | || ||||| |||| ||||| | ||| | || ||| ||| | ||||||||||| | Sbjct 1552 TGTCATAAAAATACAGACCTGTTACTGCAAAATTAGATTTAGGTTTGTTTGGTTTTTCCT 1493 Query 26307 CAA----TACTCACCACTGTACCTTCAGAATCAAACTCAACAACACCAAATCTTTCAGGA 26362 | | |||| || ||| | |||| |||||||||||||||||||||| ||||||| Sbjct 1492 CCAGAGATACTGCCCGATGT-CGTTCA---TCAAACTCAACAACACCAAATCGTTCAGGA 1437 Query 26363 TCATTTACGTGATACCCAAAGATATTAGCTCCACCATTCTTTTCAATATGTTCTTTAGCA 26422 || ||||| || || ||||| | | || || | | | ||| | || Sbjct 1436 TCTTTTACTTGGTAACCAAACACTGTTGCCCCTCGCTCACGTACAACAGCTTG------- 1384 Query 26423 GAATCTAAAATGCTACCAAAACTCTGACCAAAGAATAAATTATCACCTAGCACAAGTGCT 26482 | || ||| | ||| | |||||| | || | ||||||||| || || | Sbjct 1383 --ACGTAGCATGGGAGTAAAGCCTTGACCATAAAAAATATTATCACCAAGTACTAAACAA 1326 Query 26483 ACAGAATCTTCACCAATAAAGTTCTCACCAATAATAAACGCTTCTGCTAAACCTTTTGGG 26542 ||| | | |||||||| | ||||||||||| || |||| ||||| || | ||| Sbjct 1325 ACATTACTATTTCCAATAAACTCTTCACCAATAATGAATGCTTGCGCTAATCCATCTGGA 1266 Query 26543 CTATCCTGTATTGCATACTGTAGGGAAATACCAAAAGAAGAACCATCACCTAGAAGATTT 26602 || ||||||||||| || | | ||| ||||| ||||||| || | ||| Sbjct 1265 CTTGGTTGTATTGCATATTGCAAGTGAATCCCAAACTGCGAACCATTGCCCAAAAGGCGC 1206 Query 26603 ACAAAATTAATTTGATCTTCTGGTGTTGTAATTATTAGTATTTCCCTAATTCCAGAAAGC 26662 ||||| || | |||||| ||||| ||||| || || || || |||| |||| | | Sbjct 1205 TCAAAACTATCCTTATCTTCGGGTGTCGTAATAATAAGAATATCTTTAATACCAGCTAAC 1146 Query 26663 ATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAATTGGTAATAGTTGTTTA 26722 || || || || ||||||||||||||||| || ||||| ||||| || | |||||||| Sbjct 1145 ATAAGCACTGAAAGTGGATAATAAATCATTGGCTTATCATAAATAGGAAGCAGTTGTTTC 1086 Query 26723 CTAACCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCACCTGCTAAGATAATACCT 26782 || ||||| || | ||||| | | ||||| |||||| ||||| ||||||||| Sbjct 1085 GATACTCCTTTTGTGATGGGGTACAATCGCGTTCCTGAACCACCCGCTAAAATAATACCT 1026 Query 26783 TT 26784 || Sbjct 1025 TT 1024 Score = 129 bits (142), Expect = 6e-25 Identities = 244/355 (69%), Gaps = 22/355 (6%) Strand=Plus/Minus Query 27085 CCTTTAGTTACTACTAGGTGTAATGCCTCTGCGTGATCGTCAACGTATAACCAGTCTCTT 27144 |||||||| | ||| | | ||| || || ||||| ||||| || ||||| || | Sbjct 681 CCTTTAGTCGCAACTTGATATAAAGCTCGAGCATGATCTTCAACATACAACCAATCGCGA 622 Query 27145 ACTTGAAGACCATTACCATAAACAGGGATTGGTTT---ATGCATTAAGATATTTGTTATC 27201 | |||| || || ||||||| ||| | ||| || || || ||| |||| || Sbjct 621 ATTTGATTTCCGTTGCCATAAATAGGCAATGGCTTTCTATCCA--AAGC-ATTTAAAATA 565 Query 27202 GTTTTAGGTATTAGTTTTTCTGGATGATGATATGCTCCAAAATTATTTGAACAATTTGTT 27261 | ||| || ||||| || ||| |||||| | ||| ||||||||||||||||||| Sbjct 564 ACTAAAGGAATAAGTTTCTCGGGAAAATGATAAGGACCATAATTATTTGAACAATTTGTC 505 Query 27262 ATAACTGTCGGAATACCATAAGTACGATGCCACGCTCTTACCAAATGATCG---CTTGCA 27318 | | | || | ||||||||| |||| ||| |||||||| || |||||| ||| Sbjct 504 ACTATACTTGGTAGACCATAAGTTCGATTCCAAGCTCTTACTAAGTGATCGGAACTT--- 448 Query 27319 GCTTTAGATGCAGCATATGGACTACTTGGTTTATAAGGATTCTGTTCTGTAAA-----CG 27373 ||||| ||| | ||| ||| |||||| ||| || | | ||||||||| || Sbjct 447 GCTTTGCTTGCCGAATACGGAGAGCTTGGTGCATATGGTGTTTTTTCTGTAAATAAGTCG 388 Query 27374 GATAATCTCCTTCTTCCAGATCACCATACACTTCATCTGTTGAAATATGATGGAA 27428 | | ||| |||| | ||| ||||| |||||||| || |||||||| || || Sbjct 387 GTTGATC-----CTTCTAAATCTCCATAAACTTCATCAGTCGAAATATGGTGAAA 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475219195987680