Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq2419 282 1e-70 seq1761 176 1e-38 seq3812 129 2e-24 seq10947 120 1e-21 seq4161 120 1e-21 >seq2419 Length=5049 Score = 282 bits (312), Expect = 1e-70 Identities = 457/649 (70%), Gaps = 15/649 (2%) Strand=Plus/Plus Query 188777 TTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATG 188836 |||| ||||| ||||| |||||||| ||| |||| |||||||||||| | ||| ||| Sbjct 2449 TTGGACCTACAGGTTCGGGTAAAACTTTACTTGCGCAAACATTGGCTCGCCTTTTAGATG 2508 Query 188837 TACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATG 188896 | || | || || | |||||||| | ||||| |||||||||||||| ||||| |||| Sbjct 2509 TTCCATTTGCAATGGCAGATGCAACGACATTAACCGAAGCTGGTTATGTGGGTGAGGATG 2568 Query 188897 TGGAAAACGTATTGCTTC----GTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCG 188952 | ||||| ||||| | | | || | ||| ||| || |||||| | ||| ||| Sbjct 2569 TTGAAAA--TATTG-TACAAAAGCTTT-TGCAAAAAGCAGACTACGATGTAGAAAAAGCT 2624 Query 188953 GAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACA 189012 | || ||| | ||||| || ||| | || || ||| || | ||||| |||| || Sbjct 2625 CAGAAGGGCATTATCTATATTGACGAAATTGACAAGATTACTCGTAAATCTGAAAATCCA 2684 Query 189013 TCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAA 189072 || ||||| || ||||| ||||| ||||| ||||| ||||| || |||||||| |||||| Sbjct 2685 TCAATTACGCGTGATGTTTCTGGTGAAGGTGTACAACAAGCATTGTTAAAAATGATTGAA 2744 Query 189073 GGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTT 189132 |||||||| || ||||||| |||||||||||||| || || || ||||| | | Sbjct 2745 GGTACAGTGGCTTCTATTCCTCCGCAAGGTGGTCGTAAGCATCCGCAGCAAGAGTTTATC 2804 Query 189133 GAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAAC 189192 |||| || || | ||||||||||||||| |||||| || ||| |||| | ||||| Sbjct 2805 CAAATTGACACCTCGAATATCTTGTTTATTTGTGGTGGTGCATTTTCTGGTTTGGAAAAA 2864 Query 189193 ATTATCAAGAGACGCG-CTACA-AAATCAACTTTAGGTTTTGATGATAGTGTAGATAAAG 189250 ||| | | || ||| | | | ||| | | |||||| | | ||| |||| Sbjct 2865 ATTGT--ACAGCAGCGTCAAGAGAAAGGCGGTATTGGTTTTACAGCTGATGT---TAAAA 2919 Query 189251 TACAAGAAGAAATCAAGGATGACAATAAAGTATTCCAACATCTTCAACCGCAAGATATTG 189310 |||| |||| ||| | | || | |||| || || | || ||| | | Sbjct 2920 ACAAAGATGAAACCAAAAAACTTGCTGAATTGTTCCGTCAGGTTGAGCCAACCGATTTAG 2979 Query 189311 TTAAGTATGGTTTAATTCCAGAATTTATTGGGCGTGTACCAGTAATCGCAACTCTTAACA 189370 | || | |||||||||||||||||| ||||| ||| ||||||| || || || ||| | Sbjct 2980 TGAAATTTGGTTTAATTCCAGAATTCATTGGTCGTTTACCAGTGATTGCTACACTTGAAG 3039 Query 189371 AACTTGATCGAGATGCATTGATTAACATTTTAACTGAGCCGCAAAACGC 189419 | | ||| ||| ||||| || | ||||| |||||||| |||| || Sbjct 3040 AGTTGGATGAAGAAGCATTAATGCAAATTTTGACTGAGCCAAAAAATGC 3088 >seq1761 Length=6315 Score = 176 bits (194), Expect = 1e-38 Identities = 292/422 (69%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 188776 GTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACAT 188835 ||||| | || ||| |||| |||||||| | || |||| | || | ||||| || Sbjct 6118 GTTGGACAAACGGGTACAGGAAAAACATTGGTGGCAAAAACCATTGCCAAAATGTTGGAT 6059 Query 188836 GTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGAT 188895 || ||| | || || ||||| || || || ||||| |||||||| ||||| ||| Sbjct 6058 GTGCCTTTGGCAATAGTAGATGCGACCGTATTGACCGAAGCGGGTTATGTGGGTGAGGAT 5999 Query 188896 GTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAA 188955 || |||| | | | | || | || |||||||| || ||| | | | ||||||| Sbjct 5998 GTTGAAAGCATCCTTACGAGATTGCTTCAGGCAGCTGACTATGATGTGGCAAAAGCGGAA 5939 Query 188956 CGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCC 189015 |||||||| || | ||| ||||| | ||||||||||| |||||| || | | ||||| Sbjct 5938 CGTGGAATCGTTTTTATTGATGAGATTGATAAAATTGCCAGAAAAAGCGATAACCCATCC 5879 Query 189016 ATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGT 189075 || || ||||||| || || ||||| || || || || ||||| ||| | | ||||| Sbjct 5878 ATCACAAGAGATGTTTCCGGAGAAGGTGTTCAACAGGCGTTATTGAAACTTTTGGAAGGA 5819 Query 189076 ACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAA 189135 || || | || || || || |||| || | |||||||| ||||| || | | ||| Sbjct 5818 ACTGTAGTCAATGTGCCGCCAAAAGGAGGAAGAAAACACCCGGACCAAAAATTTGTCGAA 5759 Query 189136 ATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACATT 189195 || |||| || ||| |||||||| || || || ||||| || | |||| ||| Sbjct 5758 GTAAATACGCAAAACATCCTGTTTATTGCCGGAGGTGCTTTTGACGGAATAGAAAGAATT 5699 Query 189196 AT 189197 || Sbjct 5698 AT 5697 >seq3812 Length=3443 Score = 129 bits (142), Expect = 2e-24 Identities = 361/542 (67%), Gaps = 29/542 (5%) Strand=Plus/Plus Query 309199 TTTGATATTGCTTTAGGGAATGG---TATACCAAAAGGTCGTATTATTGAGTTTTTTGGG 309255 || |||||||| || |||| ||| | ||||||||||||||||| | ||| ||| ||| Sbjct 1701 TTAGATATTGCATTGGGGATTGGCGGTTTACCAAAAGGTCGTATTGTCGAGATTTATGGT 1760 Query 309256 GCAGAATCTTCAGGTAAAA-CACTTTG-CGCTACACGAGCAATGGCTCAAGTGCAACAAC 309313 |||||||||| ||||||| ||| || | ||||| ||| || || ||| ||| || Sbjct 1761 CCAGAATCTTCTGGTAAAACCACAATGACTCTACA--AGCGATTGCACAATGTCAAAAAG 1818 Query 309314 AAGGTGGTATTTGTGCTTTAATAGATATGGAACATGCATTCGATCCTAGTTTTGCCGCAA 309373 || |||| |||||| || || ||| || |||||||| ||||| | ||| | Sbjct 1819 CTGGCGGTACTTGTGCATTTATCGATGCAGAGCATGCATTAGATCCACAATATGCACGTA 1878 Query 309374 AATTAGGTTTAAACTCTGATGATTTATTCTTATCACAACCAGATCATATGCAAGATGCTT 309433 || | ||| || || |||| | | | ||||||| || ||| | || | ||| Sbjct 1879 AACTCGGTGTAGACATTGATAACCTGCTTGTATCACAGCCTGATAACGGTGAACAAGCTC 1938 Query 309434 TTGCGGTAATTG-----ATGCATTAATTGATTCTGGCGGTGTAGATATGATTGTTTTAGA 309488 || | ||||| |||| || || |||||||| | |||||||||||| | || Sbjct 1939 TT---GAAATTGCGGATATGC--TAGTTCGTTCTGGCGCAATTGATATGATTGTTGTCGA 1993 Query 309489 CTCAGTTGCAGCGCTTGTTCCGAAAGAGGAGCTTGAAGGTGATGTTGGTAAACAAACAAT 309548 |||||| || || ||| || |||| || |||||||||| | ||| || || Sbjct 1994 CTCAGTCGCTGCTCTTACCCCTAAAGCAGAAATTGAAGGTGA-GATGGGTGACTCTCATA 2052 Query 309549 CGGTCTTA-TTGCTCGTTATATGTCTCAATTCTTACGACGTATTACGCCTAAAGCT---- 309603 || |||| ||||| | ||| ||| | || ||||| ||| ||| Sbjct 2053 TGGGCTTACAAGCTCGCTTAATGAGTCAGGCACTTCGTAAAATTACTGGTAATGCTAAAC 2112 Query 309604 TCTCAAATGGGAGTAACTGTAATCTTCATTAATCAAATTCGTGATGCA-ATTGGTGTAAT 309662 |||||| | | || || |||||||| || |||||| ||| | ||||| ||||| Sbjct 2113 GCTCAAACTG----TATGGTTATTTTCATTAACCAGATTCGT-ATGAAGATTGGGGTAAT 2167 Query 309663 GTATGGAGATCCAACAACGACTCCTGGCGGTAAAGCATTGAAATTCTATTGTTCAGTGCG 309722 || ||| || ||| || |||| ||||| |||||||| ||||| ||| || || Sbjct 2168 GTTTGGTAGCCCTGAAACCACGACTGGTGGTAACGCATTGAAGTTCTACGCTTCTGTACG 2227 Query 309723 TT 309724 || Sbjct 2228 TT 2229 >seq10947 Length=1310 Score = 120 bits (132), Expect = 1e-21 Identities = 223/325 (69%), Gaps = 3/325 (1%) Strand=Plus/Plus Query 188869 ACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCA 188928 || ||||| |||||||| ||||| || || |||||| | | | | | || | | Sbjct 828 ACCGAAGCCGGTTATGTGGGTGAGGACGTCGAAAACATCATCCAGAAACTGCTGCA-GAA 886 Query 188929 GCTG--ATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATA 188986 |||| ||||||| | | ||| | || || || || ||||||||||| | || | Sbjct 887 GCTGCGATTACGACGTTCAGAAAGCCCAGCGCGGTATCGTGTATATCGATGAGATCGACA 946 Query 188987 AAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTAC 189046 |||| | | ||||| || | | | || || ||||| || || || || ||||| |||| Sbjct 947 AAATCTCACGTAAATCCGATAACCCGTCGATCACCCGTGACGTGTCCGGTGAAGGCGTAC 1006 Query 189047 AGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTC 189106 |||| || || | ||| | || ||||| || ||||| ||||| || || ||||||| Sbjct 1007 AGCAGGCATTGCTGAAACTTATCGAAGGGACGGTTGCCGCTGTTCCACCGCAGGGTGGTC 1066 Query 189107 GTAAACACCCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTG 189166 |||| || ||||| || || | || | | ||||| | || ||| ||||||| || Sbjct 1067 GTAAGCATCCTCAGCAGGAGTTCCTGCAGGTTGATACGTCCAAGATCCTGTTTATCTGTG 1126 Query 189167 GTGGAGCGTTTGATGGTCTTGAAAA 189191 | || ||||||| ||| || || || Sbjct 1127 GCGGTGCGTTTGCTGGCCTGGATAA 1151 >seq4161 Length=3198 Score = 120 bits (132), Expect = 1e-21 Identities = 264/393 (67%), Gaps = 2/393 (1%) Strand=Plus/Minus Query 69508 TTTGTTATTGCTGGTAATGTTGGTACACCTGAAGCTGTTCGTGAACTTGAAAATGCAGGC 69567 || || || || ||||| || || || || ||||| || || || || || ||| Sbjct 787 TTCGTGATCGCCGGTAACGTGGGCACGCCCGAAGCCGTGATCGACCTGGAGAACTGGGGC 728 Query 69568 GCAGATGCTACAAAAGTTGGTATTGGCCCAGGTAAAGTATGTATTACTAAAATCAAAACT 69627 || || || || || || || || ||||| || || || || || || || |||| || Sbjct 727 GCCGACGCGACCAAGGTCGGCATCGGCCCCGGCAAGGTCTGCATCACCAAGCTCAAGACG 668 Query 69628 GGTTTTGGTACTGGCGGCTGGCAGTTAGCTGCATTGCGTTGGTGTTCAAAAGTAGCTACT 69687 || || || || |||||||||||| | | || | ||||| | || || || Sbjct 667 GGCTTCGGCACGGGCGGCTGGCAGCTGTCGGCGCTCAAGTGGTGCGCGCGCGTGGCCACC 608 Query 69688 AAACCAATAATTGCTGATGGTGGTATTCGTACTAACGGTGATATTGCTAAATCTGTACGT 69747 ||||| || ||||| || || || || || | |||| || || || || || || Sbjct 607 AAACCCATCATTGCCGACGGCGGCATCCGCAGCCACGGCGACATCGCCAAGAGCGTGCGC 548 Query 69748 TTTGGCGCTTCAATGGTTATGATTGGTTCGCTATTTGCGGGTCACGAGGAATCACCAGGT 69807 |||||||| | ||||| ||||| || ||||| || ||||| || |||||||| || || Sbjct 547 TTTGGCGCCACCATGGTGATGATCGGCTCGCTGTTCGCGGGCCATGAGGAATCGCCGGGC 488 Query 69808 GAGACGATAGaaaaaaaTGGTAAATTATATAAAGAGTATTTTGGATCCGCTTCTGAATAT 69867 ||||| | || |||| || | | || ||||| | || || || || || | | Sbjct 487 CAGACGGTCGAGGAAAACGGCCAGCGCTTCAAGGAGTACTACGGCTCGGCCTCGGACT-T 429 Query 69868 CAA-AAGGGTGAAAAGAAGAACGTTGAAGGAAA 69899 ||| ||||| || | ||| |||| ||||| || Sbjct 428 CAACAAGGGCGAGTACAAGCACGTCGAAGGCAA 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591185534046272