Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023724.1 Length=62991 Score E Sequences producing significant alignments: (Bits) Value seq1923 98.7 4e-16 seq15871 82.4 3e-11 >seq1923 Length=5946 Score = 98.7 bits (108), Expect = 4e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 52002 CCGTTCGTGCATCCGCACGTTGCCCTCATGCCCGACGCGCACGTCGGCAAAGGTTCGTCT 52061 |||||||| ||| || ||| | ||||| |||| |||| | ||||| || || | Sbjct 3410 CCGTTCGTTGGGCCGTGGGTGGCCGTGATGCCGGACGTGCACCTGGGCAAGGGCGCGACC 3469 Query 52062 GTTGGTACCGTCATCCCCACCCGCGGCGCAGTCATCCCCGCCGCGGTCGGTGTCGACATC 52121 || || | || ||||| |||||||| || ||||||| ||||| ||||| ||||||||| Sbjct 3470 GTCGGCTCGGTGATCCCGACCCGCGGTGCGATCATCCCGGCCGCAGTCGGCGTCGACATC 3529 Query 52122 GGCTGCGGCATG 52133 |||||||||||| Sbjct 3530 GGCTGCGGCATG 3541 >seq15871 Length=886 Score = 82.4 bits (90), Expect = 3e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 595 TAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCC 649 |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| Sbjct 630 TAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCC 684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201359147206008