Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq1495 129 4e-25 seq28760 93.3 3e-14 seq9754 93.3 3e-14 seq7611 93.3 3e-14 seq1674 87.8 1e-12 >seq1495 Length=7139 Score = 129 bits (142), Expect = 4e-25 Identities = 238/342 (70%), Gaps = 13/342 (4%) Strand=Plus/Plus Query 94429 TCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCCCCACCGGC-AG 94487 ||| | ||||||||||| ||||| || | ||||||| || | || || | ||| | Sbjct 6622 TCCTCGTCGGAGACGAAGGCGCCGTGGACGCGGATGG-GCAGACCGGTGCCGCTGGCCAT 6680 Query 94488 GAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCG 94547 | | | | ||| ||||| |||| ||| |||||| || || ||| ||||| || Sbjct 6681 GTAGAGCATGTCGCCCATGCCCAGCAGCGCCTCGGCGCCCATCTGGTCGAGGATGGTGCG 6740 Query 94548 GCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAG 94607 ||| ||| | ||| | | ||| | | ||||| || | |||| |||||| || Sbjct 6741 GCTGTCGATCTTGGAGCCGACCGAGAAGGCGATCCGCGTCGGGATGTTGGCCTTGATCAG 6800 Query 94608 GCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGC 94667 ||| || | |||||||||| || |||||||||||||||| || || |||||||| || Sbjct 6801 GCCGGTGATCACATCCACGCTCGGACGCTGCGTCGCCAGGATCAGGTGGATGCCGGCGGC 6860 Query 94668 ACGCGCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCTTTCTTGTAGCCAC-- 94723 ||||||||||| || | |||| | || ||| |||| | | |||||| |||| Sbjct 6861 CCGCGCCTTCTGGGCCAGGCGGGCGATCAGTT--CCTCGATC---TTCTTG--CCCACCA 6913 Query 94724 CCATCATGAGGTCCGCGAGTTCATCCACCACTACCACGATGT 94765 ||||||| || || || || || || | || |||||||||| Sbjct 6914 CCATCATCAGATCGGCCAGCTCGTCGATGACGACCACGATGT 6955 >seq28760 Length=390 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 94876 TCTGTAACCACGGGCTGGAGAAGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACAT 94935 || || |||||| | || || || |||||| | |||||| | |||| || | ||| Sbjct 179 TCGGTGACCACGTCCGCCAGCAGATGCGGGATATCCTTGTACATGCTGAGTTCCAG-CAT 237 Query 94936 -TTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAAC 94994 ||||| ||||||||||| | | | |||| ||||| ||||||||||||||| | Sbjct 238 CTTGGGATCGATCATGATCATGCGGCACTGATCCGGGGTGAGCCGGTAGAGCAGCGACAG 297 Query 94995 CAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATG 95054 | ||| |||||| | ||||||||||| ||||| | || || || |||||||| Sbjct 298 GATCATGCAGTTGAGCCCGACCGACTTGCCCGAACCGGTGGTCCCGGCGACGAGCAGATG 357 Query 95055 CGGCATCTTGGCCAG 95069 ||||||| ||| || Sbjct 358 CGGCATCGGGGCGAG 372 >seq9754 Length=1476 Score = 93.3 bits (102), Expect = 3e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 94593 GTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 94652 |||| |||||| ||||| || | ||| ||||| || || |||||||| ||||||| || Sbjct 1159 GTTGGCCTTGATCAGGCCGGTGATCACGTCCACCGACGGGCGCTGCGTGGCCAGGATCAG 1218 Query 94653 ATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCG 94688 || ||||||||||||||||||||||| || | ||| Sbjct 1219 GTGGATGCCGGCCGCACGCGCCTTCTGTGCCAGGCG 1254 >seq7611 Length=1885 Score = 93.3 bits (102), Expect = 3e-14 Identities = 126/173 (73%), Gaps = 7/173 (4%) Strand=Plus/Minus Query 94599 CTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAAT 94658 |||||| ||||| || | || ||||| || || |||||||| ||||||| || || || Sbjct 632 CTTGATCAGGCCGGTGATGACGTCCACCGACGGGCGCTGCGTGGCCAGGATCAGGTGGAT 573 Query 94659 GCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCTTTCTTG 94716 |||||| || |||||||||||||| | |||| | || ||| |||| ||| |||||| Sbjct 572 GCCGGCGGCGCGCGCCTTCTGCGCCAGGCGGGCGATCAGTT--CCTCGACC---TTCTTG 518 Query 94717 TAGCCACCCATCATGAGGTCCGCGAGTTCATCCACCACTACCACGATGTAGGG 94769 | | |||||| | ||| |||| ||| || | | | |||||| |||| Sbjct 517 CCGACGATCATCATCATGTCGGCGAATTCGTCTATGAAGATGACGATGAAGGG 465 >seq1674 Length=6551 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/167 (72%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 94582 CGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTC 94641 |||| ||| | |||| |||||| ||||| || | ||| |||||| ||| ||||| || Sbjct 3756 CGCGTGGGAATGTTGGCCTTGATCAGGCCGGTGATCACGTCCACGCTGGGGCGCTGGGTG 3697 Query 94642 GCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCC 94701 ||||||| || || ||||||||||| || |||||||| || | ||| | || || Sbjct 3696 GCCAGGATCAGGTGGATGCCGGCCGCGCGGGCCTTCTGGGCCAGGCGCGCGATCAGCTCC 3637 Query 94702 TCAACCTCTTTCTTGTAGCCACCCATCATGAGGTCCGCGAGTTCATC 94748 || | | |||||| | | ||||||| ||||| || || || || Sbjct 3636 TCGATC---TTCTTGCCGACCACCATCATCAGGTCGGCCAGCTCGTC 3593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339974282599952