Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023744.1 Length=60588 Score E Sequences producing significant alignments: (Bits) Value seq1923 125 3e-24 >seq1923 Length=5946 Score = 125 bits (138), Expect = 3e-24 Identities = 345/516 (67%), Gaps = 27/516 (5%) Strand=Plus/Plus Query 49753 CAGCTCGGAAGCCTCGGCGGCGGTAACCATTTCATCGAACTATGCCTGGACGAAACCGGC 49812 ||||| || | || || ||||| ||||| ||||||||||| ||||||||||| |||| | Sbjct 3764 CAGCTGGGCACGCTGGGTGGCGGCAACCACTTCATCGAACTGTGCCTGGACGAGACCGAC 3823 Query 49813 CGGGTGTGGCTGTTCCTGCACTCCGGGTCGCGTGGCGTCGGCAACAAGATCGCCCAAAAG 49872 ||||||| || | |||||| ||| ||||| ||| ||||||| ||||| | | Sbjct 3824 ACGGTGTGGGTGATGCTGCACAGCGGATCGCGCGGCACCGGCAACCTGATCGGCACCTAC 3883 Query 49873 CACATCAAG--GTCGCGC-AGAAACT--CATGGACCGCTGGT-GGATT-CAGCTCCCAAG 49925 |||| || | ||||| || |||| | || || || | || || || || || Sbjct 3884 TTCATCGAGAAGGCGCGCGAGGAACTGGCCCGGCGCG-TGCTCGGCTTCCACCTGCCGGA 3942 Query 49926 CCCCGACCTGGCGTACTTGCCGCAAGGCACACCGGAGTTCGCCGACTATCTGCGGGAGC- 49984 | |||||||||| ||| | ||||| ||| ||||| ||||| | | ||| Sbjct 3943 CAAGGACCTGGCGTTCTTCATGGAAGGCGAGCCGCTGTTCGATGACTA--CGTCGAAGCC 4000 Query 49985 -TGCACTGGGCGCAGCGGTTCGCGCTAGAGAACCGCGCCGAAATGATGGACCGTTTCGCT 50043 || ||||||||| | ||| | ||||||||| | |||||| |||| Sbjct 4001 GTGTCGTGGGCGCAGGACTACGCCCGGCAGAACCGCGAGGCGATGATG-------TCGC- 4052 Query 50044 ATCGTGTTCGGCGAGTGGATCGGGCACCCC--ACCGGCGGGGC-GCTGGTGGAAACCACG 50100 |||| | | ||| ||| | |||| | ||| | | ||||| | | || Sbjct 4053 -GCGTGCTGGCCGA---GATGCGCCACCGCTTGCCGAAGTTCCAGCTGGCAGCGATGGCG 4108 Query 50101 GTGAACACGCACCACAACTACACGACGCAGGAACGGCACGGCGGCCGCGACGTGTGGCTG 50160 |||||| |||||||||||| | | ||||| |||| ||||| || || | || Sbjct 4109 GTGAACTGCCACCACAACTACGTGCAGAAGGAAACGCACCACGGCCAGGAACTGCTGGTG 4168 Query 50161 ACCCGCAAGGGCGCCATCGACGCGCACGCCGGCGTGATGGGCCTGATCCCGGGCAGCATG 50220 ||||| ||||| ||| || || | || |||| | ||||| | || || ||||||||| Sbjct 4169 ACCCGGAAGGGGGCCGTCAGTGCCCGCGAAGGCGAGCTGGGCATCATTCCCGGCAGCATG 4228 Query 50221 GGCACCCCGTCATACGTGGTGCGCGGCAAGGGCAAC 50256 ||||| | ||| | |||||||||||||||||| Sbjct 4229 GGCACGCGCAGCTACATCGTGCGCGGCAAGGGCAAC 4264 Score = 91.5 bits (100), Expect = 6e-14 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 49393 CCGTTCGTCCACCCGCATGTGGCGCTGATGCCCGACGCGCACGCCGGCAAGGGTTCATCG 49452 |||||||| ||| ||||| ||||||| |||| |||| |||||||| | | Sbjct 3410 CCGTTCGTTGGGCCGTGGGTGGCCGTGATGCCGGACGTGCACCTGGGCAAGGGCGCGACC 3469 Query 49453 GTCGGCACCGTCATCCCGACTATCGACGCCGTGATCCCGGCCGCGGTGGGCGTGGACATC 49512 |||||| | || |||||||| || || | ||||||||||| || ||||| |||||| Sbjct 3470 GTCGGCTCGGTGATCCCGACCCGCGGTGCGATCATCCCGGCCGCAGTCGGCGTCGACATC 3529 Query 49513 GGCTGCGGGATGATCGCCGCCCGCACCA 49540 |||||||| ||| |||| ||||||| Sbjct 3530 GGCTGCGGCATGGCGGCCGTACGCACCA 3557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193678228314900