Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_023747.1 Length=59672 Score E Sequences producing significant alignments: (Bits) Value seq1923 91.5 6e-14 >seq1923 Length=5946 Score = 91.5 bits (100), Expect = 6e-14 Identities = 120/165 (73%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 53996 ATCGCCGATCTGCCTTTCGTTTATCCGCATGTGGCGCTGATGCCCGATGCGCATTTCGGT 54055 ||||||| | || |||||| ||| ||||| ||||||| || | ||| | || Sbjct 3398 ATCGCCGCGATCCCGTTCGTTGGGCCGTGGGTGGCCGTGATGCCGGACGTGCACCTGGGC 3457 Query 54056 AAGGGCAGCAGTGTCGGCACGGTGATCCCAACCGAGGGCGCTGTGATCCCGGCGGCCGTC 54115 |||||| | |||||| |||||||||| ||| || || | |||||||| || ||| Sbjct 3458 AAGGGCGCGACCGTCGGCTCGGTGATCCCGACCCGCGGTGCGATCATCCCGGCCGCAGTC 3517 Query 54116 GGCGTCGATATTGGTTGCGGCATGATCGCGGCC---CGCACCACG 54157 |||||||| || || ||||||||| |||||| ||||||||| Sbjct 3518 GGCGTCGACATCGGCTGCGGCATG---GCGGCCGTACGCACCACG 3559 Score = 86.0 bits (94), Expect = 2e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 54353 CAGCTCGGCACGCTGGGCGGTGGTAATCACTTCATCGAGCTGTGCCTGGACCACCTCGAC 54412 ||||| ||||||||||| || || || ||||||||||| |||||||||||| | |||| Sbjct 3764 CAGCTGGGCACGCTGGGTGGCGGCAACCACTTCATCGAACTGTGCCTGGACGAGACCGAC 3823 Query 54413 CGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTCGGTAACAAGATCG 54464 |||||| || | |||||| ||| ||||| || ||| ||| ||||| Sbjct 3824 ACGGTGTGGGTGATGCTGCACAGCGGATCGCGCGGCACCGGCAACCTGATCG 3875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190748265356412