Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_024123.1 Length=64113 Score E Sequences producing significant alignments: (Bits) Value seq2861 214 7e-51 >seq2861 Length=4386 Score = 214 bits (236), Expect = 7e-51 Identities = 375/539 (70%), Gaps = 14/539 (3%) Strand=Plus/Plus Query 56200 ACGCCGAGAAGCGTATCGCCGGCCGGCAGCTCACGAGGAAAGCCGCTGCCGTGGACGAGA 56259 |||||| | ||||| ||||| |||||||| || ||||||| ||| ||| || Sbjct 1686 ACGCCGGGCAGCGTGTCGCCCATGGGCAGCTCGCGGATGCTGCCGCTGACGTTGACCAGG 1745 Query 56260 GGTCTGCGGGCAGCCATGCGTCACCTCACGCCAGGACGATCGGCTGGCGGCCGATCTCTA 56319 || | || | ||||||| | ||| ||||| || | ||| || ||| ||| | Sbjct 1746 GGACGCCGAGAAGCCATGACGGA--TCAGGCCAGCACTACGGGCACGCCGCC---CTCGA 1800 Query 56320 CGTTGACCACGGTAGCGCTCACCGCGGTGCCCAGCGGCTGAACGATCTGGCCGGAACCGG 56379 ||| || | || | |||||| || ||||| |||| || | | ||| || || Sbjct 1801 AGTTCACGGCAGTGGTGCTCACGGCCACGCCCAAGCGCTGCACCACGTTGCCCGATGCGC 1860 Query 56380 TAGGCGGAGTCGCCACGCCCAGGCCGGGAGTGGTCGCGCTGAGCCACACGTTACCGGGGG 56439 | || | || || ||||| ||| | |||||| || || ||||| ||||||| Sbjct 1861 TGGGTGCCGTGGCGCCGCCCGTGCCCGCAGTGGTTT-GC--AGGAACACGGGTCCGGGGG 1917 Query 56440 TCATGCCAGTGACCTGGGTGTTCGAGCCTTCGAAGTACACGGTGGCGTTCGCCGCGCTGG 56499 || | |||||||||||||||| ||| ||||||||||| || ||||| || |||||| Sbjct 1918 TCTGAGCGGTGACCTGGGTGTTCGTGCCCTCGAAGTACACCGTAGCGTTGGCGCCGCTGG 1977 Query 56500 ATACAGCGGCGAGGACGAAACCGTGTGCCATCTTCGAGGTGCCGCCGGCGGCGTCGGCTT 56559 || ||||| || ||||| ||||| ||| ||| || || || ||||||||| | Sbjct 1978 TGACGGCGGCCAGCACGAAGCCGTGGGCCTCCTTGCCGGA--CGT-GGTGGCGTCGGCCT 2034 Query 56560 TGCGCACTTTGAACGCGCCGGCATCGGCCCACACGTTCACATAGTCGCCGGCAGCCAGCG 56619 |||| || ||| ||||| | | ||||||||| || |||||||||| || |||| Sbjct 2035 TGCGGACCTTG---GCGCCCGTGCTGTTCCACACGTTGACCCAGTCGCCGGCCGCGAGCG 2091 Query 56620 CCTCGGACGCTTCGATGATCGCGGTGTCGGCACCGATACCGGTCGGCAGCACGGAGCTGT 56679 ||||| ||| |||||| ||||||||||| || || || |||| || | | ||| Sbjct 2092 CCTCGCTGGCTGCGATGACGGCGGTGTCGGCGCCAATTCCCACGGGCATCATGCTGTTGT 2151 Query 56680 CGAGGCGGCCGGTAGAGTCGAGCGCCGGGATATCGCCGGCGTTACCCGCGCCGGCCGAG 56738 ||| |||||| | | ||| || ||| ||| |||||||| || |||||||||||||| Sbjct 2152 CGATGCGGCCCGAATCGTCCAGGGCCACGATGTCGCCGGCATTGGCCGCGCCGGCCGAG 2210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 204947992090446