Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_024330.1 Length=37380 Score E Sequences producing significant alignments: (Bits) Value seq12647 127 5e-25 >seq12647 Length=1134 Score = 127 bits (140), Expect = 5e-25 Identities = 279/404 (69%), Gaps = 27/404 (7%) Strand=Plus/Minus Query 10386 CCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTCTGGTCGGCACGCAACAACTGG 10445 ||||||||||||||||||||||||||||||||||||| | || |||| | | |||| Sbjct 882 CCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGACCGGACGGC---CGAGCGCTGG 826 Query 10446 CAGGGCCAGCTCCCGCACAACCCGAAGGTCGAGCCGCGTTTCGCCCGTTTTGATACCGCA 10505 |||||| | ||| || | | || || |||| || | | || || | |||| Sbjct 825 CAGGGCATGGCGCCGGACCAATCAGGGGACG---CGCGCTTTGTC-GTGTTCA--CCGCT 772 Query 10506 CATAAC---GGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTATC---GCAAGGTCCAC 10559 | || | |||||| |||| ||| ||||||||| ||| | ||||| ||| Sbjct 771 CCGGTGTGGGGTTTGCGCGCCCTGGCCAAGGTGCTGCTGAGCTACCAGCGCAAG---CAC 715 Query 10560 GGCCTGCGCACCGTCGAAT-CGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACAC 10618 ||||||||||| | || | || | |||| |||||||||||| ||| ||||||||||| Sbjct 714 GGCCTGCGCAC-GCCGGCTGCGATCATCGGCCGCTGGGCGCCGCCCACGGAGAACGACAC 656 Query 10619 CCGCGCATATGCCACGGC-CGTGGCCCGAGCCATGGGGGTTCCGCCGCAGGCCGGCCTGC 10677 |||| || ||| || | |||||| | |||| || | | | | | | Sbjct 655 GGGCGCCTACGCC-CGCCAGGTGGCCAAGGTGCTGGGTGTAGGGGTCAACGACACCATTG 597 Query 10678 ACATGGACCAG---GACACGCTGGCCGC-CCTGGTGACCGCGATCATTCGGTACGAAAAC 10733 || || | ||| | ||||| || || | | || | || ||| | |||||||| Sbjct 596 ACCTGCAGCAGCCCGCAACGCT-GCAGCGCATCTTGCCGGCCATCGTCGCCCACGAAAAC 538 Query 10734 GGGCAGCAGCCCTACAGCGCCGAGCAGATCGCCCAGGCCGTGCG 10777 ||||||||||| ||||||||||||| ||||||| | |||||||| Sbjct 537 GGGCAGCAGCCGTACAGCGCCGAGCTGATCGCCGAAGCCGTGCG 494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119443970301156