Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq13261 95.1 1e-14 seq2869 95.1 1e-14 seq799 95.1 1e-14 seq17901 86.0 6e-12 seq7592 86.0 6e-12 seq1439 84.2 2e-11 >seq13261 Length=1077 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 146725 CGGTGTATAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGAT 146784 ||| ||||||||||| ||||||||||||||| ||||||| |||||||||| ||||||| Sbjct 630 CGGGGTATAGCGCAGTCTGGTAGCGCATCTGCTTTGGGAGCAGAGGGTCGGGGGTTCGAA 689 Query 146785 TCCAGCTACACCGACCA 146801 ||| |||| ||||||| Sbjct 690 TCCCTCTACCCCGACCA 706 >seq2869 Length=4376 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/238 (70%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 111914 GCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTGG- 111972 || || ||||| ||||||| ||| || ||||||| ||||| || | || ||||| || Sbjct 799 GCCATGGCATTGATGGTCAGGTCGCGCCGGGCCAGATCCTGCTCCAGCGTGACATCGGGC 858 Query 111973 GCTGAACATCACCTCGAAATCGTGGTATCCTGCGCCAGTTGAACGCTCGGTACGGGCCAG 112032 || | | ||| ||||| | |||| || ||| | ||||||||||| ||||| Sbjct 859 GCCGC-CTGCACGACGAAACCCCGGTACCCCAGGCCGCTCTTGCGCTCGGTACGCGCCAG 917 Query 112033 GGCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAA-TGCGGCACCGACTTGCT 112091 || || || || | ||||| ||||| ||| | || ||||| | | || || ||| || Sbjct 918 CGCATATTCCTCGTGCGTCTCGGGATGGAGGAAGACCGGGAAGTCCCGC-CCCACTGGCA 976 Query 112092 CGAAGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACGGTC 112149 |||||| | || ||| | |||| | |||| ||||||||| || |||| ||||| Sbjct 977 GAAAGCCGCGCGCGGACATTTGTTCGGGCGTGGCGCCGACCACCACCCAGTCGCGGTC 1034 >seq799 Length=11159 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 146732 TAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGATTCCAGCT 146791 |||||||||||||||||||||||| ||||||| ||||||||||| |||||| ||| || Sbjct 3572 TAGCGCAGCCTGGTAGCGCATCTGCTTTGGGAGCAGAGGGTCGCGAGTTCGAATCCCGCC 3631 Query 146792 ACACCGACCAAATTATT 146808 | |||||||||| ||| Sbjct 3632 GCTCCGACCAAATGATT 3648 >seq17901 Length=771 Score = 86.0 bits (94), Expect = 6e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 146725 CGGTGTATAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGAT 146784 ||| || |||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 375 CGGAGTGTAGCGCAGTCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGGGAGTTCGAA 316 Query 146785 TCCAGCTACACCGACCA 146801 || | || ||||||| Sbjct 315 TCTCTCCACTCCGACCA 299 >seq7592 Length=1889 Score = 86.0 bits (94), Expect = 6e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 146732 TAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGATTCCAGCT 146791 |||||||||||||||||||||||| ||||||| ||||||||||| |||||| ||| || Sbjct 1634 TAGCGCAGCCTGGTAGCGCATCTGCTTTGGGAGCAGAGGGTCGCGAGTTCGAATCCCGCC 1693 Query 146792 ACACCGACCA 146801 | ||||||| Sbjct 1694 GCTCCGACCA 1703 >seq1439 Length=7353 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 146725 CGGTGTATAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGAT 146784 ||| | ||||| ||||||||||| ||| ||||||||||||||| |||||| ||||||| Sbjct 7093 CGGAGCATAGCACAGCCTGGTAGTGCACCTGGTTTGGGACCAGGGGGTCGTAGGTTCGAA 7152 Query 146785 TCCAGCTACACCGACCAAATT 146805 ||| || | ||||||| ||| Sbjct 7153 TCCTACTGCTCCGACCATATT 7173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476978414129680