Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_024360.1 Length=138036 Score E Sequences producing significant alignments: (Bits) Value seq4033 188 6e-43 seq23727 141 8e-29 seq29118 111 1e-19 >seq4033 Length=3286 Score = 188 bits (208), Expect = 6e-43 Identities = 394/587 (67%), Gaps = 0/587 (0%) Strand=Plus/Minus Query 104780 AACTGGAATGATATTCGGTATCCGTCTTTCTATCGAGCTTACAAGGAGTTAACTACAAAT 104839 ||||||||||| || | ||| ||||| |||||||| || ||||||||| | | || || Sbjct 617 AACTGGAATGACATCCCGTACCCGTCCTTCTATCGCGCCTACAAGGAGCTGTCGACCAAC 558 Query 104840 TACTGGTTGCCCGATGAGGTAGATATGAAGAGTGATGCCAAACAGTACAACCACTTACCC 104899 | |||| | ||||| ||||| || |||||| ||||| |||||| | | | || Sbjct 557 TTCTGGATCCCCGACGAGGTCGACATGAAGGCCGATGCGCGCCAGTACGGCGAGCTGTCC 498 Query 104900 GAAGAAGAGAAGTATGCGTTTGATTCCATTATTGGACTTTTAGCTACACTTGACTCACCT 104959 | || ||| | || | || || || || || || | || || || |||||||| Sbjct 497 GGGCGCGAAAAGAACGCCTACGACTCGATCATCGGCCTGCTGGCCACGCTCGACTCACCG 438 Query 104960 CAAACACGTTTTATTTATAATATCGCAGAATATGTCAGTGATGCCTCTGTTCATGCTATT 105019 || || || || || || || | || || || ||| || | | | ||||| | | Sbjct 437 CAGACGCGCTTCATCTACAACGTGGCCGAGTACATCACCGACCCGGCCGCGCATGCCAAT 378 Query 105020 ACTGCTATCATTGCACAACAAGAAGCTATTCATAACGAAAGCTACTCTTATGTACTTGCT 105079 | || ||||| | || || |||| || || ||||| || ||| ||||| || || Sbjct 377 GCCGCGATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGTTACAGCTATGTGCTGGCC 318 Query 105080 TCTATTACTAACTTACAGGAGCAGAATCGAGTATTTGAGGAAGCTAGAACACACCCTACG 105139 || || || || | | | | ||||| || |||||||| || | || || || || Sbjct 317 TCGATCACCGACCTGCCGAACCAGAACCGCGTATTTGAACTGGCGCGCACCCATCCGACC 258 Query 105140 ATTATTAAACGTAATGCACCTATTATGGAGTCTTATGACGATTTCATGAATAATAAAACA 105199 || || || || || || || || |||| | |||||||| |||||| | || || Sbjct 257 ATCATCAAGCGCAACGCGCCGATCATGGGCGCGTATGACGACTTCATGCGCGAGAAGACC 198 Query 105200 CCTGAGAATATGGTAAAAGCTTTAGTACAATCATCTATCTTAGAGGGTATTAATTTCTAC 105259 | |||| || | || | || | || || || ||| | ||||| || || ||||| Sbjct 197 GCCGAGACCCTGTTGAAGTCGTTGATCCAGTCCTCGATCCTGGAGGGCATCAACTTCTAT 138 Query 105260 AGCGGTTTTGCTTACTTCTATAACCTCGTTCGTCAAAACAAGATGACAGGGACAGGTAAA 105319 ||| ||||| |||||||| ||| | || || || ||| ||||| || || || || Sbjct 137 TCCGGATTTGCGTACTTCTACAACATGGTGCGGCAGAACCGCATGACCGGCACCGGCAAG 78 Query 105320 ATCATCAGCTTCATTAATCGTGATGAGTTAGCCCATTCGAAGTTTAT 105366 |||||||| ||||| || || || || | |||||| | ||||| || Sbjct 77 ATCATCAGTTTCATCAACCGCGACGAACTGGCCCATACCAAGTTCAT 31 >seq23727 Length=536 Score = 141 bits (156), Expect = 8e-29 Identities = 308/461 (67%), Gaps = 0/461 (0%) Strand=Plus/Minus Query 104906 GAGAAGTATGCGTTTGATTCCATTATTGGACTTTTAGCTACACTTGACTCACCTCAAACA 104965 |||||| |||| | || | || || || || | || || || || ||||| || || Sbjct 491 GAGAAGAATGCCTACGACGCGATCATCGGCCTGCTGGCCACGCTCGATTCACCGCAGACG 432 Query 104966 CGTTTTATTTATAATATCGCAGAATATGTCAGTGATGCCTCTGTTCATGCTATTACTGCT 105025 || || || || || | || || || ||| ||| | | | ||||| | | || Sbjct 431 CGCTTCATCTACAACGTGGCCGAGTACATCACCGATCCGGCCGCGCATGCCAACGCCGCG 372 Query 105026 ATCATTGCACAACAAGAAGCTATTCATAACGAAAGCTACTCTTATGTACTTGCTTCTATT 105085 ||||| | || || |||| || || ||||| |||||| || || || || || || Sbjct 371 ATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGCTACAGCTACGTGCTGGCCTCGATC 312 Query 105086 ACTAACTTACAGGAGCAGAATCGAGTATTTGAGGAAGCTAGAACACACCCTACGATTATT 105145 || || | | | | ||||| || | || ||| || | || ||||| || || || Sbjct 311 ACCGACCTGCCGAACCAGAACCGCATTTTCGAGATCGCCCGTACCCACCCGACCATCATC 252 Query 105146 AAACGTAATGCACCTATTATGGAGTCTTATGACGATTTCATGAATAATAAAACACCTGAG 105205 || || || || || || |||| | ||||||||||||||| | || || | ||| Sbjct 251 AAGCGCAACGCGCCGATCATGGGTGCGTATGACGATTTCATGCGCGAGAAGACTGCCGAG 192 Query 105206 AATATGGTAAAAGCTTTAGTACAATCATCTATCTTAGAGGGTATTAATTTCTACAGCGGT 105265 | || | | | || | || || || ||| | || || || || ||||| ||| Sbjct 191 ACGCTGCTCAGGTCGTTGATCCAGTCCTCGATCCTGGAAGGCATCAACTTCTATTCCGGC 132 Query 105266 TTTGCTTACTTCTATAACCTCGTTCGTCAAAACAAGATGACAGGGACAGGTAAAATCATC 105325 || || |||||||| ||||| || || || ||| ||||| || || || || |||||| Sbjct 131 TTCGCCTACTTCTACAACCTGGTGCGGCAGAACCGCATGACCGGCACCGGCAAGATCATC 72 Query 105326 AGCTTCATTAATCGTGATGAGTTAGCCCATTCGAAGTTTAT 105366 |||||||| || ||||||||| | |||||| | ||||| || Sbjct 71 AGCTTCATCAACCGTGATGAGCTGGCCCATACCAAGTTCAT 31 >seq29118 Length=380 Score = 111 bits (122), Expect = 1e-19 Identities = 173/245 (71%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 105485 GAGGTACTACAGGGCATTGAAGGAATTGATGTGGAAGAAATGTTAGACTATGTAAAATAT 105544 || ||||| | ||||| || || || |||||||| |||||| ||| || || || Sbjct 131 GAAGTACTGGACGGCATCGACGGCATCGATGTGGAGGAAATGACGCGCTACGTGAAGTAC 190 Query 105545 CGCGCTAATAAAATGTTAGGGATGCTAGGTCTCCAACCAATGTATCAAGGTCAC-ACAGA 105603 ||||| || || ||| || ||||| || || | | |||| || | ||| || || Sbjct 191 CGCGCCAACAAGATGGCCGGCATGCTCGGCATCGAGCGCCTGTA-CAGCGACACCACCGA 249 Query 105604 AAATTCTATGACATGGATTAAAGCTTACGCCGATAACTTTACAGAAACAAAAACCGATTT 105663 || ||| | ||||| || || ||||| || ||||| || || || || ||||| || Sbjct 250 CAACGTGATGCCGTGGATCAAGGCCTACGCTGACAACTTCACCGAGACCAAGACCGACTT 309 Query 105664 TTTCGAAATGCGTAACTCTAGTTACAAGAAAACAAACTTAGACAATGGGTTCGATGACTT 105723 ||||| ||||| || | ||||||||||| || ||| | ||||| || ||||| ||| | Sbjct 310 CTTCGAGATGCGCAATGCAAGTTACAAGAAGACCAACGTCGACAACGGCTTCGACGACCT 369 Query 105724 ATGAG 105728 |||| Sbjct 370 CTGAG 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441391030406240