Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_024364.1 Length=131952 Score E Sequences producing significant alignments: (Bits) Value seq23727 123 2e-23 seq29118 96.9 3e-15 >seq23727 Length=536 Score = 123 bits (136), Expect = 2e-23 Identities = 304/461 (66%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 38358 ATAAACTTCGAATGGGCTAACTCATCACGATTAATGAAGCTAATGATTTTACCTGTTCCC 38417 || ||||| | |||||| | ||||||||| || |||||||| ||||| || || || || Sbjct 31 ATGAACTTGGTATGGGCCAGCTCATCACGGTTGATGAAGCTGATGATCTTGCCGGTGCCG 90 Query 38418 GTCATCTTGTTTTGACGAACAAGGTTATAGAAGTAAGCAAAACCGCTGTAGAAATTAATA 38477 ||||| ||| || || || ||||| |||||||| || || ||| ||||| || || Sbjct 91 GTCATGCGGTTCTGCCGCACCAGGTTGTAGAAGTAGGCGAAGCCGGAATAGAAGTTGATG 150 Query 38478 CCCTCTAAGATAGATGATTGTACTAAAGCTTTTACCATATTCTCAGGTGTTTTGTTATTC 38537 || || | ||| || || || | || | | | || |||| | || || | | Sbjct 151 CCTTCCAGGATCGAGGACTGGATCAACGACCTGAGCAGCGTCTCGGCAGTCTTCTCGCGC 210 Query 38538 ATGAAATCGTCATAAGACTTCATAATAGGTGCATTACGTTTAATAATCGTAGGGTGTGTT 38597 |||||||||||||| | ||| || || || || || || || || || ||||| || Sbjct 211 ATGAAATCGTCATACGCACCCATGATCGGCGCGTTGCGCTTGATGATGGTCGGGTGGGTA 270 Query 38598 CTAGCTTCCTCAAATACTCGATTCTGCTCTTGTAAGTTAGTAATAGAAGCAAGTACATAA 38657 | || ||| || | || ||||| | | | || || || || || || || || Sbjct 271 CGGGCGATCTCGAAAATGCGGTTCTGGTTCGGCAGGTCGGTGATCGAGGCCAGCACGTAG 330 Query 38658 GAATAACTCTCATTATGAATAGCTTCTTGTTGTGCAATAATAGCTGTAATAGCATGAACA 38717 || ||||| || || || |||| || || | || || || | | ||||| | Sbjct 331 CTGTAGCTCTCGTTGTGGATCACTTCCTGCTGGCCGATGATCGCGGCGTTGGCATGCGCG 390 Query 38718 GAGGCATCACTGACATACTCTGCGATATTATAAATAAAACGTGTTTGGGGTGAGTCAAGT 38777 | | ||| ||| ||||| || | || || || || || || || ||||| || || Sbjct 391 GCCGGATCGGTGATGTACTCGGCCACGTTGTAGATGAAGCGCGTCTGCGGTGAATCGAGC 450 Query 38778 GTAGCTAAAAGTCCGATAATGGAGTCAAACGCATATTTCTC 38818 || || | || ||||| || | ||| | |||| ||||| Sbjct 451 GTGGCCAGCAGGCCGATGATCGCGTCGTAGGCATTCTTCTC 491 >seq29118 Length=380 Score = 96.9 bits (106), Expect = 3e-15 Identities = 170/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 37996 CTCATAAGTCATCGAACCCATTATCTAAATTTGTTTTCTTGTAACTAGAGTTACGCATTT 38055 |||| | ||| ||||| || || || | || || ||||||||||| | || ||||| | Sbjct 374 CTCAGAGGTCGTCGAAGCCGTTGTCGACGTTGGTCTTCTTGTAACTTGCATTGCGCATCT 315 Query 38056 CGAAAAAGTCGGTTTTTGTTTCTGTAAAGTTATCGGCGTAAGCTTTAATCCATGTCATAG 38115 |||| |||||||| || || || || ||||| || ||||| || || ||||| | ||| Sbjct 314 CGAAGAAGTCGGTCTTGGTCTCGGTGAAGTTGTCAGCGTAGGCCTTGATCCACGGCATCA 255 Query 38116 AATTTTCTGT-ATGACCTTGATACATTGGTTGGAGACCTAGCATCCCTAACATTTTATTA 38174 || || || || | || |||| | | || || ||||| || ||| || || Sbjct 254 CGTTGTCGGTGGTGTCGCTG-TACAGGCGCTCGATGCCGAGCATGCCGGCCATCTTGTTG 196 Query 38175 GCACGATATTTTACATAGTCTAACATTTCTTCCACATCAATTCCTTCAATGCCTTGTAGT 38234 || || || || || ||| |||||| |||||||| || || || ||||| | ||| Sbjct 195 GCGCGGTACTTCACGTAGCGCGTCATTTCCTCCACATCGATGCCGTCGATGCCGTCCAGT 136 Query 38235 ACCTC 38239 || || Sbjct 135 ACTTC 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421938765811827