Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq9250 215 2e-51 seq9999 205 3e-48 seq1231 156 1e-33 seq12370 134 5e-27 seq34516 86.0 2e-12 >seq9250 Length=1556 Score = 215 bits (238), Expect = 2e-51 Identities = 271/371 (73%), Gaps = 1/371 (0%) Strand=Plus/Minus Query 40419 CCTATGGCAGCCCTGAGCAGCGAGGTGAAGGCCTTCATCGTTCAGGCTCTTGCCTGCTTC 40478 |||||||||||||| |||| ||| ||||||||||| || |||||||| | || |||||| Sbjct 567 CCTATGGCAGCCCTCAGCAACGACGTGAAGGCCTTTATTGTTCAGGCCTTGGCGTGCTTC 508 Query 40479 GATACACCCTCACAGGTGGCAGAGGCCGTCAAGCGAGAATTCAACATCGAGGTGAGCCGT 40538 || | || |||||||||| |||||||||| || |||||||| ||||| |||| ||| Sbjct 507 GACAG-CCTTCACAGGTGGTAGAGGCCGTCCAGAAAGAATTCAGCATCGCAGTGACCCGC 449 Query 40539 CAGCAGGTGGAGTCACACGACCCCACCAAGCGATGCAGTAAAACCCTGGCCAAGCGTTGG 40598 |||||||||||| | ||||| ||||| ||| | | | || ||| |||||||| ||| Sbjct 448 CAGCAGGTGGAGACGCACGATCCCACGAAGTACTCCGGCAAGGGCCTAGCCAAGCGCTGG 389 Query 40599 GTGGACATGTTCCACGACGCGCGAGAGAGGTTCCGCCACCAGGCGATTGACATACCCATC 40658 |||| | ||||| | ||| | || || |||||||| | | | || || |||||| Sbjct 388 GTGGCCTTGTTCGAGGACACACGCAAGCGGTTCCGCGAGGAAACAGCCGAGATTCCCATC 329 Query 40659 GCCAACCGGGCCTACAGGCTTCGGGCTATGGGGAGGATTATCGAGAAGGCCGAGAGCATG 40718 || ||| | || | | ||||||| | | ||| | || ||||||||||||| |||| Sbjct 328 GCGAACAGAGCTTTCCGGCTTCGCGGCCTAGGGCGAATGGCTGAGAAGGCCGAGAACATG 269 Query 40719 AAGAACCTGTCTCTCGCACTACAGGTGCTTGAGCAGGCGGCAAAGGAAACTGGCGACGCC 40778 ||||| | || | ||| || ||||||||||| |||||| |||||| Sbjct 268 CGCAACCTAGCGCTGACTGCCCAGCTGTACGAGCAGGCGGCCAAGGAATGCGGCGACATG 209 Query 40779 TACGTGAATCG 40789 ||||| || || Sbjct 208 TACGTCAACCG 198 >seq9999 Length=1435 Score = 205 bits (226), Expect = 3e-48 Identities = 209/272 (77%), Gaps = 13/272 (5%) Strand=Plus/Minus Query 15655 CTTGCATGGGGTGCTAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCATATAATTCAA 15714 |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 266 CTTGCATGGGGTGCAAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCATATATTTCAA 207 Query 15715 TGACTTAGCCGCCTTTGTGCGGCTTTGTTGTTTTTGCCTCAGTGACTTTCCGAGTGATCC 15774 ||||||||| |||| | | |||||| | |||||||| | ||| |||| | | Sbjct 206 CGACTTAGCCACCTTCGGGTGGCTTTTTCGTTTTTGCAT--GTG-----GGGAGTTTTTC 154 Query 15775 CGGTCTTTTTGCTCATGCCTGTTTCCTCTTGAGGATGGTGAGCGCTGGTGCGCGCGAGTC 15834 || || |||| | ||||||||| | ||| || | | | || |||| ||||| Sbjct 153 GGGACT------TCATCCGATTTTCCTCTTCAAGATCGTCAACACCGGCCCGCGAGAGTC 100 Query 15835 AGTTGCTGATACCTTATTTGCCGCTGCAATGAGTTGATCCAGTTCCGCTGCTGAGTAGTG 15894 ||||| ||||||| | || || || |||| || | |||| || || | |||||||| Sbjct 99 AGTTGTTGATACCATGTTCGCAGCCTCAATCAGCTTGCCCAGCTCAGCGCCGGAGTAGTG 40 Query 15895 ACTGGTGATGCTTCCGTTCTTGTGCCCGAGCA 15926 ||||||||||| ||||||||||||||||||| Sbjct 39 GCTGGTGATGCTGCCGTTCTTGTGCCCGAGCA 8 >seq1231 Length=8178 Score = 156 bits (172), Expect = 1e-33 Identities = 242/344 (70%), Gaps = 14/344 (4%) Strand=Plus/Minus Query 32779 GGCGGAACAGTTCGAACTGCAGCAGGCCGCCAATCAGGCCCTGGCCATCGCCGCGCCCAA 32838 ||| |||||| | |||| ||| ||||||||| |||||| | || |||||||| Sbjct 1787 GGCCGAACAGCTGGAACAGCAACAGGCCGCC---------CTGGCCTTGGCAGCGCCCAA 1737 Query 32839 AGCCGAGTTCGTAGACAAGTACGTCGAGTCCACCGGCCTCAAGGGCTTCCGTCAAACCGC 32898 ||||||| || || ||||| | ||| |||| |||||||||||||| || Sbjct 1736 GGCCGAGTATGTGGATCGCTACGTGGCCGCCAACGGCGCAAAGGGCTTCCGTCAGGTGGC 1677 Query 32899 CAAGCTGCTGGGTGCTAATGAGGCCCGC-TTCCGCGAGTTCCTGCTTGATCGCCGGATCA 32957 ||||||| |||| || || || || ||| ||||| | | |||| || ||||| Sbjct 1676 CAAGCTGTTGGGCGCGAACGA-GCACGCTTTCCGGGCCTGGCTGCAGGACGAAAAGATCA 1618 Query 32958 TGTACCGCATGGGCGGGGAATGGCAGGCCTACCAGAACCACGTTGACGCAGGCCGCTTTG 33017 |||||||| ||||||| || ||| || ||||| ||| | || || |||||||||| Sbjct 1617 TGTACCGCCTGGGCGGCGAGTGGACCGCGCACCAGTGTCACATCGATGCCGGCCGCTTTG 1558 Query 33018 AAGTGAAGACCGGC---ACCACTGACGGCGGGCACGCATTCAACCAAGCCAAATTCACCC 33074 |||||||| ||| || | | || ||| || |||||| | || ||||||| Sbjct 1557 TCGTGAAGACAGGCGTGGCCCAGGCCAACGAGCATGCCTTCAACGCGACGAAGTTCACCC 1498 Query 33075 CCAAGGGCGTCAACTGGATTGCCGGTCTGTGGGCTCAGTACAAG 33118 |||||||||| |||||| | ||||| ||||||| ||| || || Sbjct 1497 CCAAGGGCGTGAACTGGGTGGCCGGCCTGTGGGGCCAGCACCAG 1454 >seq12370 Length=1162 Score = 134 bits (148), Expect = 5e-27 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22733 GCGGGCTCTCTGATTGCGTCGCTGTCGTAGTGGTACCGCCGCGACTTGCTGAGCAGGAAC 22792 || ||||| ||| ||| | |||| ||| ||| || ||||| ||||||||| Sbjct 603 GCAGGCTCCGCGATGGCGGCCGCGTCGAAGTAGTAGCGTTCAGACTTCGACAGCAGGAAC 544 Query 22793 AGGTATTCGTGAGCCTTGGTGCAGCGGTCACGCGTCGACTCCGGCATAGGGTTTGGCTTG 22852 |||| ||||| | ||| ||||| || || ||| ||||||||||| ||||| |||||| Sbjct 543 AGGTGCTCGTGCGACTTCGTGCATCGATCGCGCACGGACTCCGGCATGGGGTTCGGCTTG 484 Query 22853 TGCCAGATGATGTCCTGCCGGAGATACCAGCCGTCGTCCTGCAGCGCGAAGGCCAGGCGC 22912 ||||||||||||||| || || |||||||| || | | ||||||||||||| | Sbjct 483 GACCAGATGATGTCCTGACGCAGGTACCAGCCATCCGCACGTAGCGCGAAGGCCACCATC 424 Query 22913 CAGGGCATGCCCATCAAGTCTTTCGGCTT 22941 || || ||||| |||| ||| ||||| || Sbjct 423 CACGGGATGCCGATCAGGTCCTTCGGTTT 395 Score = 96.9 bits (106), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 23041 CGCGCCCCAGCTACCGGCGTAGCTGTCGCCCATGTTTACCCAGATCGTGCCGTCAGCGCG 23100 ||||||| || || |||||||||||||| | ||| | ||| | ||||||||| | || Sbjct 188 CGCGCCCA--CTGCCTGCGTAGCTGTCGCCGAGGTTCAGCCACACGGTGCCGTCATCCCG 131 Query 23101 GAGCACCCGGCGCACTTCGCGGAACACGTCGACCAACCGAGCGATGAACTCGGCAGGTGT 23160 || || ||||| || || |||||||| | |||| ||| ||| || | || | Sbjct 130 CAGGACGCGGCGAACCTCCCGGAACACCTGCACCAGGGCGTCGACGAATTCCTCTGGCGA 71 Query 23161 TTCCTCAAGGCCGATCTGGCCTTCTACGCCATAGTCACGCAGGCCGTAGTAGGGCGG 23217 | ||| || |||||||| || || ||||| ||||| || |||||| | || ||||| Sbjct 70 TGGCTCCAGCCCGATCTGTCCATCGACGCCGTAGTCGCGGAGGCCGAAATACGGCGG 14 >seq34516 Length=236 Score = 86.0 bits (94), Expect = 2e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 17790 CCCTCGGCCCGTGCCTGATTCTCGGCAATGTCGTTCAGGCGCTCTACCCTCACGGCGGTT 17849 || || ||| |||||| | ||| || || | |||| |||| |||| ||| || || Sbjct 115 CCTTCCGCCTCTGCCTGCTCTTCGCTGATTTCCTGCAGGAGCTCGACCCGCACTGCAGTG 56 Query 17850 ACCTCCAGCAGGATGCGGCTGACCCAGCGCGGCATGTGGATGGATGGCCG 17899 | ||||||||||||||||| ||||||||||||||||||| ||||| || Sbjct 55 ATTTCCAGCAGGATGCGGCTAGCCCAGCGCGGCATGTGGATAGATGGGCG 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163297455192936