Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_024383.1 Length=135831 Score E Sequences producing significant alignments: (Bits) Value seq4033 199 3e-46 seq23727 136 3e-27 seq29118 104 2e-17 >seq4033 Length=3286 Score = 199 bits (220), Expect = 3e-46 Identities = 410/611 (67%), Gaps = 0/611 (0%) Strand=Plus/Minus Query 96205 AGTGGTATCGTAAACTGGAACGATATTCGGTATCCGTCTTTCTATCGAGCTTACAAAGAG 96264 || || ||| | |||||||| || || | ||| ||||| |||||||| || ||||| ||| Sbjct 629 AGCGGGATCCTGAACTGGAATGACATCCCGTACCCGTCCTTCTATCGCGCCTACAAGGAG 570 Query 96265 TTAACTACAAATTACTGGTTGCCTGATGAGGTAGATATGAAGAGCGATGCCAAACAGTAC 96324 | | || || | |||| | || || ||||| || |||||| |||||| |||||| Sbjct 569 CTGTCGACCAACTTCTGGATCCCCGACGAGGTCGACATGAAGGCCGATGCGCGCCAGTAC 510 Query 96325 AACCACTTATCCGAAGAAGAGAAGTATGCGTTTGACTCCATTATCGGACTTTTAGCTACA 96384 | | | |||| || ||| | || | ||||| || ||||| || | || || Sbjct 509 GGCGAGCTGTCCGGGCGCGAAAAGAACGCCTACGACTCGATCATCGGCCTGCTGGCCACG 450 Query 96385 CTTGACTCACCCCAAACACGTTTTATTTATAATATCGCAGAGTATGTCAGTGATGCCTCC 96444 || |||||||| || || || || || || || | || ||||| ||| || | || Sbjct 449 CTCGACTCACCGCAGACGCGCTTCATCTACAACGTGGCCGAGTACATCACCGACCCGGCC 390 Query 96445 GTTCATGCTATTACAGCTATCATTGCACAACAAGAAGCTATTCATAATGAGAGTTATTCT 96504 | ||||| | | | || ||||| | || || |||| || || || |||||||| Sbjct 389 GCGCATGCCAATGCCGCGATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGTTACAGC 330 Query 96505 TATGTACTTGCTTCTATTACTAACTTACAAGAGCAGAATCGAGTATTTGAGGAAGCTAGA 96564 ||||| || || || || || || | | | ||||| || |||||||| || | Sbjct 329 TATGTGCTGGCCTCGATCACCGACCTGCCGAACCAGAACCGCGTATTTGAACTGGCGCGC 270 Query 96565 ACACACCCTACGATTATTAAACGTAATGCACCTATTATGAAGTCTTATGACGATTTCATG 96624 || || || || || || || || || || || || ||| | |||||||| |||||| Sbjct 269 ACCCATCCGACCATCATCAAGCGCAACGCGCCGATCATGGGCGCGTATGACGACTTCATG 210 Query 96625 AATAACAAAACACCTGAGAATATGGTAAAAGCTTTAGTACAATCATCTATCTTAGAGGGT 96684 | || || | |||| || | || | || | || || || ||| | ||||| Sbjct 209 CGCGAGAAGACCGCCGAGACCCTGTTGAAGTCGTTGATCCAGTCCTCGATCCTGGAGGGC 150 Query 96685 ATTAATTTCTACAGCGGTTTTGCTTACTTCTACAACCTCGTTCGTCAAAACAAGATGACG 96744 || || ||||| ||| ||||| |||||||||||| | || || || ||| ||||| Sbjct 149 ATCAACTTCTATTCCGGATTTGCGTACTTCTACAACATGGTGCGGCAGAACCGCATGACC 90 Query 96745 GGGACAGGTAAAATCATTAGCTTCATTAATCGTGATGAATTAGCCCATTCGAAATTTATN 96804 || || || || ||||| || ||||| || || || ||| | |||||| | || || || Sbjct 89 GGCACCGGCAAGATCATCAGTTTCATCAACCGCGACGAACTGGCCCATACCAAGTTCATC 30 Query 96805 NNNGAGCTAAT 96815 ||||| || Sbjct 29 AGCGAGCTGAT 19 >seq23727 Length=536 Score = 136 bits (150), Expect = 3e-27 Identities = 313/473 (66%), Gaps = 0/473 (0%) Strand=Plus/Minus Query 96343 GAGAAGTATGCGTTTGACTCCATTATCGGACTTTTAGCTACACTTGACTCACCCCAAACA 96402 |||||| |||| | ||| | || ||||| || | || || || || ||||| || || Sbjct 491 GAGAAGAATGCCTACGACGCGATCATCGGCCTGCTGGCCACGCTCGATTCACCGCAGACG 432 Query 96403 CGTTTTATTTATAATATCGCAGAGTATGTCAGTGATGCCTCCGTTCATGCTATTACAGCT 96462 || || || || || | || ||||| ||| ||| | ||| ||||| | | || Sbjct 431 CGCTTCATCTACAACGTGGCCGAGTACATCACCGATCCGGCCGCGCATGCCAACGCCGCG 372 Query 96463 ATCATTGCACAACAAGAAGCTATTCATAATGAGAGTTATTCTTATGTACTTGCTTCTATT 96522 ||||| | || || |||| || || || ||||| || || || || || || || Sbjct 371 ATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGCTACAGCTACGTGCTGGCCTCGATC 312 Query 96523 ACTAACTTACAAGAGCAGAATCGAGTATTTGAGGAAGCTAGAACACACCCTACGATTATT 96582 || || | | | ||||| || | || ||| || | || ||||| || || || Sbjct 311 ACCGACCTGCCGAACCAGAACCGCATTTTCGAGATCGCCCGTACCCACCCGACCATCATC 252 Query 96583 AAACGTAATGCACCTATTATGAAGTCTTATGACGATTTCATGAATAACAAAACACCTGAG 96642 || || || || || || ||| | ||||||||||||||| | || || | ||| Sbjct 251 AAGCGCAACGCGCCGATCATGGGTGCGTATGACGATTTCATGCGCGAGAAGACTGCCGAG 192 Query 96643 AATATGGTAAAAGCTTTAGTACAATCATCTATCTTAGAGGGTATTAATTTCTACAGCGGT 96702 | || | | | || | || || || ||| | || || || || ||||| ||| Sbjct 191 ACGCTGCTCAGGTCGTTGATCCAGTCCTCGATCCTGGAAGGCATCAACTTCTATTCCGGC 132 Query 96703 TTTGCTTACTTCTACAACCTCGTTCGTCAAAACAAGATGACGGGGACAGGTAAAATCATT 96762 || || |||||||||||||| || || || ||| ||||| || || || || ||||| Sbjct 131 TTCGCCTACTTCTACAACCTGGTGCGGCAGAACCGCATGACCGGCACCGGCAAGATCATC 72 Query 96763 AGCTTCATTAATCGTGATGAATTAGCCCATTCGAAATTTATNNNNGAGCTAAT 96815 |||||||| || |||||||| | |||||| | || || || ||||| || Sbjct 71 AGCTTCATCAACCGTGATGAGCTGGCCCATACCAAGTTCATCAGCGAGCTGAT 19 >seq29118 Length=380 Score = 104 bits (114), Expect = 2e-17 Identities = 240/359 (67%), Gaps = 2/359 (1%) Strand=Plus/Plus Query 96808 GAGCTAATTAGAGCTATTGTAGGGGAAAACCCTGAACTACAAACAGATGAACTAAATGAC 96867 ||||| || | || || | || || ||||| || || || || | || || | ||| Sbjct 17 GAGCTGATCCGCGCCATCATCGGCGAGAACCCGGAGCTGCAGACCAACGAGCTGACCGAC 76 Query 96868 TACGTGTACGCTTCTTTTAGACATGCCGTAGAGCTAGAACAAGCGTGGTCTAGTGAGGTA 96927 || ||| || | || ||| ||| | || || ||| |||||| || ||| Sbjct 77 TATGTGCACCAGGCGTTCGAACACGCCATCGAACTGGAAACCCAGTGGTCATCGGAAGTA 136 Query 96928 CTACAAGGCATTGAAGGAATTGATGTGGAAGAAATGTTAGACTATGTAAAATATCGTGCT 96987 || | ||||| || || || |||||||| |||||| ||| || || || || || Sbjct 137 CTGGACGGCATCGACGGCATCGATGTGGAGGAAATGACGCGCTACGTGAAGTACCGCGCC 196 Query 96988 AATAAAATGTTAGGGATGTTAGGTCTTCAACCAATGTATCAAGGTCAC-ACAGAAAATTC 97046 || || ||| || ||| | || | | | |||| || | ||| || || || Sbjct 197 AACAAGATGGCCGGCATGCTCGGCATCGAGCGCCTGTA-CAGCGACACCACCGACAACGT 255 Query 97047 TATGACATGGATTAAAGCTTACGCCGATAACTTTACAGAAACAAAAACCGACTTTTTCGA 97106 ||| | ||||| || || ||||| || ||||| || || || || |||||||| ||||| Sbjct 256 GATGCCGTGGATCAAGGCCTACGCTGACAACTTCACCGAGACCAAGACCGACTTCTTCGA 315 Query 97107 AATGCGTAACTCTAGTTACAAGAAAACAAACTTAGACAATGGGTTCGATGACTTATGAG 97165 ||||| || | ||||||||||| || ||| | ||||| || ||||| ||| | |||| Sbjct 316 GATGCGCAATGCAAGTTACAAGAAGACCAACGTCGACAACGGCTTCGACGACCTCTGAG 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434338164946040