Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq19645 138 1e-27 seq34320 131 2e-25 seq7414 125 7e-24 seq2166 123 2e-23 seq34564 116 4e-21 seq28136 109 5e-19 seq20474 109 5e-19 seq14623 107 2e-18 seq25614 105 6e-18 seq32362 84.2 2e-11 seq31347 82.4 7e-11 >seq19645 Length=690 Score = 138 bits (152), Expect = 1e-27 Identities = 154/203 (76%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || | | |||| | | | |||||||||||||| | Sbjct 545 GGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCA-TCCTCGAGCTGCTTCC 487 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| ||||| || || |||||||| ||||||| || Sbjct 486 CGGCAAAGATCAGCCTCTGCTGGTCCGGAGGAATCCCCTCCTTGTCCTGGATCTTTGCCT 427 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | |||||||| | |||||| |||| ||| | ||| || |||||||| | Sbjct 426 TGACGTTATCGATCGTGTCGGAGCTCTCCACCTCGAGGGTTATGGTCTTCCCGGTCAGCG 367 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || ||||| ||||||||| || Sbjct 366 TCTTCACGAAGATCTGCATGCCT 344 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || || || || | | ||| | | | |||||||||||||| | Sbjct 317 GGTCGACTCCTTCTGGATGTTATAGTCCGCGAGTGTGCGGCCA-TCCTCGAGCTGCTTCC 259 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| ||||||||| || || |||||||||||||| |||||| || Sbjct 258 CGGCGAATATCAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTCGCCT 199 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| |||||||| | |||||| |||| |||| ||| || ||||| || | Sbjct 198 TGACATTGTCAATCGTGTCGGAGCTCTCCACCTCGAGCGTGATGGTCTTCCCGGTAAGGG 139 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 138 TCTTCACGAAGATCTGCAT 120 >seq34320 Length=242 Score = 131 bits (144), Expect = 2e-25 Identities = 144/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| ||| ||| || | | | ||||||||||||||||| ||| | || Sbjct 1 TTCTGGATGTTGTAGTCGGCCAAGGTACGGCCA-TCCTCGAGCTGCTTGCCAGCGAAGAT 59 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 |||| ||||||||| || ||||||||||||||||| |||||| ||||| | || Sbjct 60 CAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTC 119 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | ||||||| | ||| || |||| |||| ||| |||||||| || || || ||||| Sbjct 120 GATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAA 179 Query 133652 AATCTGCAT 133660 |||||||| Sbjct 180 GATCTGCAT 188 >seq7414 Length=1926 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || |||| | | | ||||| ||||||||||| Sbjct 28 GTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGGCCA-TCCTCCAGCTGCTTGCC 86 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | ||||||||||| ||||| |||||||||||||| ||||| ||| Sbjct 87 GGCGAAAATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCGTCTT 146 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || ||| | | ||| ||||| | |||| || ||||| |||| || Sbjct 147 CACGTTGTCGATCGAGTCCGACGACTCGACGTCAAGAGTGATCGTCTTGCCCGTCAACGT 206 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 207 CTTCACGAAAATCTGCAT 224 >seq2166 Length=5462 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| || |||| || ||||||||||| || || || |||||||| Sbjct 809 TCCTCGAGCTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGCGGAATACCTTCCTTT 868 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||||||| | |||| ||||| ||||||||||| | |||| | Sbjct 869 TCCTGGATTTTCTGCTTGACATTGTCAATGCAGTCGGACGGCTCCACGTCCAACGTGATG 928 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||||||||| || || || || ||||||||| Sbjct 929 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATG 964 >seq34564 Length=234 Score = 116 bits (128), Expect = 4e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||||||||||||||| ||||| | || |||| ||||||||| ||||||||||| ||||| Sbjct 209 GTCCTCGAGCTGCTTACCCGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTT 150 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||| | | || | ||||| | | |||||| |||| ||||| Sbjct 149 GTCCTGGATCTTGGCCTTCACGTTATCGATGGTGTCCGAGCTCTCCACCTCGAGGGTGAT 90 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||| || ||||| || || || || || ||||||||| Sbjct 89 GGTCTTCCCGGTGAGGGTCTTGACAAAGATCTGCATG 53 >seq28136 Length=407 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| ||| ||| | | | || || | |||||||| Sbjct 209 GGTTGACTCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCCA-TCTTCCAACTGCTTGC 151 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| | || || || ||||||||||| ||||| ||||| ||||| ||| || || Sbjct 150 CCGCAAATATCAGACGTTGCTGGTCGGGCGGGATCCCTTCTTTGTCCTGGATTTTGGCCT 91 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || ||| || || || || | ||| | ||| ||||| ||||| | Sbjct 90 TCACATTGTCGATTGTATCGCTGCTTTCAACTTCTAAGGTTATGGTCTTGCCCGTCAGGG 31 Query 133642 TTTTTACGAAAATCTGCAT 133660 | |||||||| |||||||| Sbjct 30 TCTTTACGAAGATCTGCAT 12 >seq20474 Length=655 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || || || ||| ||| ||| | | | || ||||||||||| | Sbjct 127 GGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCA-TCTTCGAGCTGCTTCC 185 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || ||||| || |||||||| |||||| || Sbjct 186 CAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCT 245 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| || |||| | ||| || |||| |||| || || || || || | Sbjct 246 TAACATTGTCAATTGTATCGGAGCTCTCTACCTCGAGAGTGATTGTCTTACCAGTGAGGG 305 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||||||||| Sbjct 306 TCTTCACAAAAATCTGCAT 324 >seq14623 Length=969 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| |||||||||||| | | || | | | || || |||||||| || Sbjct 230 GTGGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCA-TCTTCCAGCTGCTTTCC 172 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||| ||||| || || ||||||||||| || ||| ||| ||| Sbjct 171 AGCAAATATCAGACGCTGTTGGTCCGGGGGAATGCCTTCCTTATCCTGGATTTTTGCCTT 112 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| | | ||| || || | |||| ||| |||||||| ||||| Sbjct 111 TACATTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATGGTCTTGCCGGTAAGAGT 52 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| || ||||| Sbjct 51 TTTGACGAAGATTTGCAT 34 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGG-ACGAGTCCTCGAGCTGCTTGC 133521 |||||| |||||||| || ||||||||| | | || || | |||||||||||||| | Sbjct 687 GGTGGATTCTTTCTGGATGTTGTAATCGGCAAGGGTTCTACCA-TCCTCGAGCTGCTTTC 629 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | ||||||||||| || || ||||| || ||||| |||||| || Sbjct 628 CGGCAAAGATTAAACGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCT 569 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| || || | | ||| || || | ||||| || || || || || | Sbjct 568 TGACATTATCAATAGTATCCGAGCTCTCAACTTCCAAGGTGATCGTCTTTCCAGTGAGGG 509 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || ||||||||||| Sbjct 508 TTTTAACAAAAATCTGCAT 490 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || |||||||| |||||||| || | | || | | | || ||||||| Sbjct 921 ATGCAAGGTAGATTCTTTCTGAATATTGTAGTCAGCAAGGGTTCGGCCA-TCTTCGAGCT 863 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | || || || | || || ||||||||||| || ||||||||||||||||| |||| Sbjct 862 GTTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGTATCT 803 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | || | ||||| | | |||||| || | || | ||| || || | Sbjct 802 TAGCCTTCACATTGTCGATGGTGTCCGAGCTCTCCACTTCCAAAGTAATGGTCTTACCTG 743 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | || ||||| || || ||||||||| Sbjct 742 TTAGGGTTTTGACAAAGATCTGCATG 717 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGC 133514 ||| | ||| || || || || |||||||| || ||| || || || || |||||| Sbjct 465 ATGCAGGGTTGATTCCTTTTGAATATTGTAGTCTGCCAGGGTTCGGCCG--TCTTCGAGC 408 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || || || |||||||| || ||||| ||||||||||| |||| Sbjct 407 TGCTTTCCGGCAAATATCAGACGTTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATC 348 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || || | | |||| || || | | ||| || || | || | || || || Sbjct 347 TTGGCTTTTACATTGTCAATGGTATCCGAGCTCTCAACTTCCAACGTTATCGTCTTACCA 288 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||| ||||| ||||| ||||||||| Sbjct 287 GTCAGGGTTTTGACGAAGATCTGCATG 261 >seq25614 Length=477 Score = 105 bits (116), Expect = 6e-18 Identities = 134/180 (74%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTG 133520 ||| || |||||||| || ||||||||| | | || || || ||||| |||||||| Sbjct 301 GGTAGATTCTTTCTGGATGTTGTAATCGGCAAGGGTTCGGCCG--TCCTCAAGCTGCTTT 358 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || || |||||||||||||| ||||| ||||||||||| |||| || || Sbjct 359 CCTGCGAAGATCAGACGCTGCTGGTCGGGGGGGATCCCTTCCTTGTCCTGGATC-TTAGC 417 Query 133581 TTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 || | | | |||| ||||| | | ||| || |||| |||| ||| || ||||| || Sbjct 418 TTTAACATTGTCAATGGTGTCAGAGCTCTCGACTTCGAGAGTGATGGTCTTACCGGTGAG 477 Score = 100 bits (110), Expect = 3e-16 Identities = 150/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCA---TCGTGGACGAGTCCTCG 133511 ||||| | ||| || || || || ||||||||||| ||| || || | | ||||| Sbjct 65 AAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAGCCAAGGTCCTG--CCA-TCCTCC 121 Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 |||||||| || ||| | || |||| ||||||||| || || || ||||||||||| | Sbjct 122 AGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGG 181 Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||||| ||||| | |||| ||||| | | ||| || || | || | || || Sbjct 182 ATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGCTCTCAACTTCCAATGTAATTGTCTTT 241 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || |||||||| || || |||||| Sbjct 242 CCAGTTAGTGTTTTTACAAAGATTTGCATG 271 >seq32362 Length=298 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| || || |||||| ||| || | ||||| ||||| || || Sbjct 202 GTAGATTCCTTCTGGATGTTATAATCGGCCAGAGTTCGCCCATCCTCCAGCTGTTTACCA 143 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582 || | ||||||| |||||| || || || || ||||||||||| ||| ||| || || Sbjct 142 GCAAATATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTGTC-CTGAATTTTCGCTTT 84 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||| |||| | ||| || || | |||| || ||||| |||| || Sbjct 83 TACGTTATCAATCGTATCGGAGCTCTCAACCTCCAGTGTGATAGTCTTGCCTGTCAACGT 24 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 23 CTTCACAAATATCTGCAT 6 >seq31347 Length=324 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| || || ||||| || |||||||| | | ||| | ||||||||||||||| || Sbjct 215 GGTCGATTCCTTCTGAATGTTGTAATCCGCAAGGGTGCGCCCGTCCTCGAGCTGCTTCCC 274 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||| | || |||| ||||||||| || ||||| || |||||||| Sbjct 275 AGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATCCCCTCCTTGTC 319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483206046352360