Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1997 183 7e-41 seq451 129 1e-24 seq1084 86.0 1e-11 >seq1997 Length=5797 Score = 183 bits (202), Expect = 7e-41 Identities = 547/842 (65%), Gaps = 9/842 (1%) Strand=Plus/Minus Query 110301 GACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATC 110360 || ||||| || || || || | || ||| | ||| | || | ||||| | || Sbjct 1135 GATTATTTCGGATTTAAGACGTTGGAGCGTTCGTATCTGCTAAAAATAAATGGAAAAATT 1076 Query 110361 ATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATT 110420 | ||| | || ||||||||||| | |||||||| |||| || ||| |||| | Sbjct 1075 GTGGAAAGACCACAACACATGTTGATGCGTGTTGCCGTTGGAATCCATTTGAATGACCTG 1016 Query 110421 AAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCT 110480 | || || | ||| |||||| | | || ||| || ||||| || || Sbjct 1015 GATGCAGTATTGGAAACTTATGACCTGATGTCCAAGAAGTTCTTTACGCATGCAACGCCA 956 Query 110481 ACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATT 110540 || |||| || || |||||| | ||| || |||| ||||| ||||| | ||| Sbjct 955 ACGTTATTCAATGCCGGAACTCCAAAACCGCAAATGTCTTCCTGCTTCCTTCTGGCAATG 896 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 | || || ||| || || ||||| ||| | || || |||| || ||||| || Sbjct 895 CAGGACGACAGTATCGACGGAATTTACGATACGCTAAAGCAAACAGCCAAAATTTCACAA 836 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATC--- 110657 |||||||||| || || | ||| || |||| | | || | ||||| Sbjct 835 TCGGCTGGAGGAATCGGGCTTTCAATCCATAATGTTCGTGCCACGGGTTCCTATATCCGC 776 Query 110658 GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACT 110717 | |||| || || | |||| ||| ||||||| ||||| | || ||||| || || Sbjct 775 GGAACA---AACGGAACGTCAAACGGAATTGTTCCGATGTTGCGTGTTTTCAATGATACC 719 Query 110718 GCAAAATATGTGAATCA---AGGTGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAA 110774 || ||||| | || ||| || || | || || |||||||||||| ||||| Sbjct 718 GCTCGTTATGTAGACCAGGGAGGAGGAAAACGCAAAGGAAGTTTTGCTATCTATATCGAA 659 Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAA 110834 | ||||| | ||||| ||||| ||| | || || ||||| || ||| |||||| Sbjct 658 ACATGGCACGCTGATATTTTTGATTTCCTTGACCTGAAGAAAAACCATGGAAAAGAAGAA 599 Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894 | || ||||||||||| | ||| ||||||| ||| || || ||||||||||||||| Sbjct 598 ATGCGTGCGCGTGATTTATTCTTTGCCATGTGGACTTCGGACTTGTTCATGAAACGTGTT 539 Query 110895 CAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTA 110954 || ||| || | ||| | | |||||||| | | || || || | |||| | Sbjct 538 CAGGAAGATTCTACATGGACGTTGATGTGTCCAAACGAATGCCCGGGACTTTATGATATT 479 Query 110955 TATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAA 111014 || || |||| ||||||| ||||| |||||| || | |||| | ||| Sbjct 478 TACGGTGAAGAATTTGAAGCGCTTTATACTTCTTATGAAGAACAGGGCAGAGGAAGAAAA 419 Query 111015 CAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACT 111074 ||| || |||||||||| ||||| || ||||| ||| ||||||| ||||| Sbjct 418 ACCATTAAGGCAAGAGAACTTTGGGAAAAAATTCTGGAATCTCAAATTGAAACCGGAACA 359 Query 111075 CCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACA 111134 || || || ||||||||||| || || ||||| || || | || | |||||| Sbjct 358 CCATACATGCTGTATAAAGATGCGGCAAACCGTAAATCAAACCAGAAAAACCTGGGAACA 299 Query 111135 AT 111136 || Sbjct 298 AT 297 Score = 127 bits (140), Expect = 5e-24 Identities = 161/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 131785 ATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGC 131844 |||||| |||||||| || ||||| || |||||| | ||||||||| || ||||| Sbjct 2337 ATTTCCGGCAATTAAGAAAAAAGCGGACTGGGCTTTAAAATGGATTGAATCCGATTCA-- 2280 Query 131845 TAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGC 131904 ||| || |||||| | |||||||| || ||||| || || || ||||| || Sbjct 2279 ----TTTGCTGAAAGACTGATTGCTTTTGCAGCCGTAGAAGGAATCTTTTTCTCAGGAGC 2224 Query 131905 TTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAA 131964 |||||| |||||| |||| | || || |||||||||||||| || || | || || || Sbjct 2223 ATTCTGTTCTATCTATTGGTTGAAAAAACGTGGATTGATGCCGGGTCTTACTTTTTCAAA 2164 Query 131965 TCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 | |||| || || | ||||||| | ||| ||| ||||| Sbjct 2163 TGAATTGATTTCACGTGATGAAGGCGTACATTGTGATTTTGC 2122 >seq451 Length=16219 Score = 129 bits (142), Expect = 1e-24 Identities = 461/712 (65%), Gaps = 19/712 (3%) Strand=Plus/Minus Query 110301 GACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATC 110360 || || ||||| || ||||| || || | | ||| | | || || |||||| | | Sbjct 9417 GATTACTTTGGGTTTAAAACACTGGAGAGAGGTTACCTTTTCCGCGTGAATGGCAAAGTG 9358 Query 110361 ATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATG-GA-CATGATA 110418 ||||||| || || || ||| || | || ||||| |||| |||||| || || | | Sbjct 9357 GTTGAACGACCCCAGCAAATGATTATGCGCGTTGCTCTTGGGATTCATAAGAGCA--ACA 9300 Query 110419 TTAAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTC 110478 || |||| | | | || || || | | | ||||| || ||||| || | Sbjct 9299 TTCAAGCAGCTTTAGAGACGTACGAATTGATGTCTCAAAAGTTCTTTACCCATGCGACGC 9240 Query 110479 CTACCCTATTTAACGCAGGAACTA-ATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGA 110537 | || | ||||| || || ||| | || | ||||| |||| || ||| | || | Sbjct 9239 CCACGTTGTTTAATGCTGGCACTCCACGGCCG-CAATTATCTTCGTGTTTTTTACTTGCC 9181 Query 110538 ATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCT 110597 || | |||||||| |||||||| || |||||| | | || || |||| ||| || Sbjct 9180 ATGCAAGATGATTCAATTGAAGGAATCTATGATACATTGAAGCAATGTGCTTGTATCTCA 9121 Query 110598 AAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATC 110657 || | ||||| ||||| || | | || |||| || | | || || || Sbjct 9120 AAGTGGGCGGGAGGTATTGGGATCAGCATGCACAATATCCGAGCTAC--GAACAGCTA-- 9065 Query 110658 GCAACAGCG-----AAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACG 110712 || | | | || || |||| | || | | || ||||| | || || |||| Sbjct 9064 -CATCCGTGGTACTAACGGGTCTTCCAACGGTATCATCCCCATGTTGCGCGTGTTTAACG 9006 Query 110713 ACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATC 110769 |||| || |||||| | |||||||| ||| | || || || ||||| ||||| Sbjct 9005 ACACGGCTCGGTATGTGGACCAAGGTGGAGGTAAACGCAAAGGTTCCTTTGCAATCTACT 8946 Query 110770 TCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTG 110829 | ||||| |||||| |||| | ||||| ||| | || || || |||||||| || || Sbjct 8945 TGGAACCATGGCATGCAGACGTGTTTGAGTTCCTCGATCTCCGAAAAAATCACGGCAGTG 8886 Query 110830 AAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAAC 110889 || || |||| ||||| || ||||| || | ||||| || ||| | |||||||||| Sbjct 8885 AACTGCACCGAGCGCGTGACTTGTTTTACGCTCTATGGATATCTGATCTGTTCATGAAAC 8826 Query 110890 GTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTG 110949 | || || ||||||| |||| | | | ||||| | |||||||||| | | Sbjct 8825 GAGTGGAAAGTAATGGCAAGTGGAGTTTGTTTTGTCCAAACGAAGCTCCTGGTCTCTACG 8766 Query 110950 ATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG 111001 | | ||| | || ||||| ||| ||||||| ||||| || || || Sbjct 8765 AGTGCTGGGGAGATGAATTTGAGACCCTCTACGAAACGTATGAGAAGGAGGG 8714 >seq1084 Length=9009 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 305345 CAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTG 305404 || || || || || || ||||| || ||| | ||| |||||||| | | | Sbjct 5131 CAGCCTTCGCTTCACAAGATGTCAATTATGTCCCATCGTGTCAAAGTGATGCCATGGCGC 5190 Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 || ||||| || || | | | | ||| |||| ||||||||||||||||| ||||||||| Sbjct 5191 ACGTTTCGCTTCAACGAATGCGTTTGCTCGCCGTATAATGCGGATTTTGACGGAGATGAA 5250 Query 305465 ATGAATATGCATGTACCTCA 305484 |||||||||||| | ||||| Sbjct 5251 ATGAATATGCATCTTCCTCA 5270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186272392579979