Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_024787.1 Length=132541 Score E Sequences producing significant alignments: (Bits) Value seq23727 141 8e-29 seq29118 93.3 4e-14 >seq23727 Length=536 Score = 141 bits (156), Expect = 8e-29 Identities = 308/461 (67%), Gaps = 0/461 (0%) Strand=Plus/Minus Query 98922 GAGAAGTATGCGTTTGACTCCATTATCGGACTTTTAGCTACACTTGACTCACCCCAAACA 98981 |||||| |||| | ||| | || ||||| || | || || || || ||||| || || Sbjct 491 GAGAAGAATGCCTACGACGCGATCATCGGCCTGCTGGCCACGCTCGATTCACCGCAGACG 432 Query 98982 CGTTTTATTTATAACATTGCAGAGTATGTCAGTGATGCCTCCGTTCATGCTATTACAGCT 99041 || || || || ||| | || ||||| ||| ||| | ||| ||||| | | || Sbjct 431 CGCTTCATCTACAACGTGGCCGAGTACATCACCGATCCGGCCGCGCATGCCAACGCCGCG 372 Query 99042 ATCATTGCACAACAAGAAGCTATTCATAATGAGAGTTATTCTTATGTACTTGCTTCTATT 99101 ||||| | || || |||| || || || ||||| || || || || || || || Sbjct 371 ATCATCGGCCAGCAGGAAGTGATCCACAACGAGAGCTACAGCTACGTGCTGGCCTCGATC 312 Query 99102 ACTAACTTACAAGAGCAGAATCGAGTATTTGAGGAAGCTAGAACACACCCTACGATTATT 99161 || || | | | ||||| || | || ||| || | || ||||| || || || Sbjct 311 ACCGACCTGCCGAACCAGAACCGCATTTTCGAGATCGCCCGTACCCACCCGACCATCATC 252 Query 99162 AAACGTAATGCACCTATTATGAAGTCTTATGACGATTTCATGAATAACAAAACACCTGAG 99221 || || || || || || ||| | ||||||||||||||| | || || | ||| Sbjct 251 AAGCGCAACGCGCCGATCATGGGTGCGTATGACGATTTCATGCGCGAGAAGACTGCCGAG 192 Query 99222 AATATGGTAAAAGCTTTAGTACAATCATCTATCTTAGAGGGTATTAATTTCTACAGCGGT 99281 | || | | | || | || || || ||| | || || || || ||||| ||| Sbjct 191 ACGCTGCTCAGGTCGTTGATCCAGTCCTCGATCCTGGAAGGCATCAACTTCTATTCCGGC 132 Query 99282 TTTGCTTACTTCTATAACCTTGTTCGTCAAAACAAGATGACGGGAACAGGTAAAATCATT 99341 || || |||||||| ||||| || || || ||| ||||| || || || || ||||| Sbjct 131 TTCGCCTACTTCTACAACCTGGTGCGGCAGAACCGCATGACCGGCACCGGCAAGATCATC 72 Query 99342 AGCTTCATTAATCGTGATGAGTTAGCCCATTCGAAGTTTAT 99382 |||||||| || ||||||||| | |||||| | ||||| || Sbjct 71 AGCTTCATCAACCGTGATGAGCTGGCCCATACCAAGTTCAT 31 >seq29118 Length=380 Score = 93.3 bits (102), Expect = 4e-14 Identities = 169/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 99501 GAGGTACTACAGGGCATTGAAGGAATTGATGTGGAAGAAATGTTAGACTATGTAAAATAT 99560 || ||||| | ||||| || || || |||||||| |||||| ||| || || || Sbjct 131 GAAGTACTGGACGGCATCGACGGCATCGATGTGGAGGAAATGACGCGCTACGTGAAGTAC 190 Query 99561 CGTGCTAATAAAATGTTAGGGATGCTAGGTCTCCAACCAATGTATCAAGGTCAT-ACAGA 99619 || || || || ||| || ||||| || || | | |||| || | || || || Sbjct 191 CGCGCCAACAAGATGGCCGGCATGCTCGGCATCGAGCGCCTGTA-CAGCGACACCACCGA 249 Query 99620 AAATTCTATGACATGGATTAAAGCTTACGCCGATAATTTTACAGAAACAAAAACCGACTT 99679 || ||| | ||||| || || ||||| || || || || || || || |||||||| Sbjct 250 CAACGTGATGCCGTGGATCAAGGCCTACGCTGACAACTTCACCGAGACCAAGACCGACTT 309 Query 99680 TTTCGAAATGCGTAACTCTAGTTACAAGAAAACAAATTTAGATAATGGGTTCGATGACTT 99739 ||||| ||||| || | ||||||||||| || || | || || || ||||| ||| | Sbjct 310 CTTCGAGATGCGCAATGCAAGTTACAAGAAGACCAACGTCGACAACGGCTTCGACGACCT 369 Query 99740 ATGAG 99744 |||| Sbjct 370 CTGAG 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423822749445458