Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_024792.1 Length=160281 Score E Sequences producing significant alignments: (Bits) Value seq5911 82.4 8e-11 seq2111 82.4 8e-11 seq1289 82.4 8e-11 >seq5911 Length=2359 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 132307 AGAAGGATTCGAACCTCCGACACAGGGATTTTCAGCCCCCTGCTCTACCAACTGAGCTAC 132366 ||| ||| ||||||| ||||||| |||||||||| |||||||||||||||||||||||| Sbjct 943 AGACGGAATCGAACCGCCGACACGGGGATTTTCAATCCCCTGCTCTACCAACTGAGCTAC 884 Query 132367 CAGTCCAA 132374 | |||| Sbjct 883 TCGGCCAA 876 >seq2111 Length=5547 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 147806 TTTCTAGGAGTACCCTTCAATATCGCAAGCTACGCACTATTGACTCACCTTATCGCAAAG 147865 ||| ||||||| || || || || ||| || ||| ||||||| | || || || Sbjct 3299 TTTTTAGGAGTGCCTTTTAACATAGCATCTTATGCATTATTGACATTGATGATTGCTCAG 3358 Query 147866 ATGACAGGATTAAAACCCGGAAAATTCATCCATACCTTCGGTGACGCTCATATCTATAAC 147925 | | |||||||| ||| | || |||||||| || |||||||| || ||||||||| Sbjct 3359 GTTTGCGATTTAAAACCGGGAGATTTTATCCATACTTTTGGTGACGCGCACATCTATAAC 3418 Query 147926 AACCATATTGAAGCAGT 147942 |||||||||||| |||| Sbjct 3419 AACCATATTGAA-CAGT 3434 >seq1289 Length=7978 Score = 82.4 bits (90), Expect = 8e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 132307 AGAAGGATTCGAACCTCCGACACAGGGATTTTCAGCCCCCTGCTCTACCAACTGAGCTAC 132366 ||| ||| ||||||| ||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1584 AGACGGAATCGAACCGCCGACACGGGGATTTTCAATCCCCTGCTCTACCAACTGAGCTAC 1525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512543407804040