Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq28136 98.7 7e-16 seq2166 98.7 7e-16 seq14623 89.7 3e-13 seq7414 89.7 3e-13 >seq28136 Length=407 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || ||||||||||| | || |||||| | || ||||| || || || ||||| Sbjct 203 CTCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCCATCTTCCAACTGCTTGCCCGCAAA 144 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| ||| ||||| || |||| | ||||||||||| ||||| ||| |||| Sbjct 143 TATCAGACGTTGCTGGTCGGGCGGGATCCCTTCTTTGTCCTGGATTTTGGCCTTC-ACAT 85 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | || ||||| ||| || || | || || || || || || | || |||| Sbjct 84 TGTCGATTGTATCGCTGCTTTCAACTTCTAAGGTTATGGTCTTGCCCGTCAGGGTCTTTA 25 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 24 CGAAGATCTGCAT 12 >seq2166 Length=5462 Score = 98.7 bits (108), Expect = 7e-16 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || |||||||| || || || || || | || || | || || |||||||||| Sbjct 774 CTTTCTGGATGTTGTAGTCCGAAAGCGTTCGGCCATCCTCGAGCTGCTTGCCGGCAAAAA 833 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 ||| |||||||| || |||| | |||||| || || |||||||| || |||| | Sbjct 834 TCAGGCGCTGCTGGTCAGGCGGAATACCTTCCTTTTCCTGGATTTTCTGCTT-GACATTG 892 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | | |||| | |||||||| | |||||| || || || || | || || ||| Sbjct 893 TCAATGCAGTCGGACGGCTCCACGTCCAACGTGATGGTCTTGCCGGTCAGGGTCTTCACA 952 Query 33739 AAGATCTGCAT 33749 ||||||||||| Sbjct 953 AAGATCTGCAT 963 >seq14623 Length=969 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||||||| | || | ||| || || || ||||| || ||||| || | Sbjct 489 ACCACCCCTCAAACGGAGGACGAGATGCAGGGTTGATTCCTTTTGAATATTGTAGTCTGC 430 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || |||| || | || ||||||||||| |||| ||| ||||| || |||| Sbjct 429 CAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCAAATATCAGACGTTGCTGGTCAGGCGG 370 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCC 33699 | ||||| ||||| || || | || |||| ||| | ||| || | | | || Sbjct 369 GATTCCTTCCTTGTCCTGGATCTT-GGCTTTTACATTGTCAATGGTATC-CGAGCTCTCA 312 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||| ||||| ||||| || | ||||| || ||||||||||| Sbjct 311 ACTTCCAACGTTATCGTCTTACCAGTCAGGGTTTTGACGAAGATCTGCAT 262 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| ||| | || | ||| | || ||||| || || ||||| || | Sbjct 944 CCACCTCTCAGACGGAGGACAAGATGCAAGGTAGATTCTTTCTGAATATTGTAGTCAGCA 885 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | |||||||| ||||| |||| |||||||| || | || Sbjct 884 AGGGTTCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 825 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCA 33700 | ||||| ||||| || || |||| ||| ||| | |||||| | | | |||| Sbjct 824 ATGCCTTCCTTGTCCTGTATCTTAGCCTTCA-CATTGTCGATGGTGTC-CGAGCTCTCCA 767 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || |||||||||| ||||| |||||||||||||| Sbjct 766 CTTCCAAAGTAATGGTCTTACCTGTTAGGGTTTTGACAAAGATCTGCAT 718 >seq7414 Length=1926 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| ||| | ||||| | || |||| || || ||||| || Sbjct 33 CTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAA 92 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||||||||||||| || | || | ||||| ||||| ||| ||| || | || | Sbjct 93 AATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTC-GTCTTCACGT 151 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | | ||| || || ||||||| |||||||| || || || ||||| || | Sbjct 152 TGTCGATCGAGTCCGACGACTCGACGTCAAGAGTGATCGTCTTGCCCGTCAACGTCTTCA 211 Query 33737 CAAAGATCTGCAT 33749 | || |||||||| Sbjct 212 CGAAAATCTGCAT 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328561627922880