Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq28136 114 3e-20 seq14623 114 3e-20 seq32362 109 1e-18 seq25614 109 1e-18 seq27836 102 2e-16 seq19645 102 2e-16 seq31848 95.1 3e-14 seq20474 86.0 1e-11 >seq28136 Length=407 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || || || || ||||| ||||| || ||| |||| Sbjct 27 AAGACCCTGACGGGCAAGACCATAACCTTAGAAGTTGAAAGCAGCGATACAATCGACAAT 86 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || |||||||| || ||| ||| ||| | || || || Sbjct 87 GTGAAGGCCAAAATCCAGGACAAAGAAGGGATCCCGCCCGACCAGCAACGTCTGATATTT 146 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||||||||||||||| | ||| |||| ||||||||| | ||||||||||| Sbjct 147 GCGGGCAAGCAGTTGGAAGATGGACGCACTCTGGCGGATTACAACATTCAGAAAGAGTCA 206 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || | |||||||| |||| ||||| Sbjct 207 ACCTTGCACCTTGTGCTGAGGCTTCG 232 >seq14623 Length=969 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| ||||| |||||||| |||||||| || || || || Sbjct 493 CAGATTTTTGTTAAAACCCTCACTGGAAAGACGATCACCTTGGAAGTTGAGAGCTCGGAT 552 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || ||||| || ||| || ||| || Sbjct 553 ACTATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCTGACCAGCAG 612 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| |||||||||||| | || ||||| || || | |||||||||||| || Sbjct 613 CGTTTAATCTTTGCCGGAAAGCAGCTCGAGGATGGTAGAACCCTTGCCGATTACAACATC 672 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||| || || | ||||| || Sbjct 673 CAGAAAGAATCCACCTTGCACCTGGT 698 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || || || || || |||||| | ||||| || || |||||||| | || Sbjct 48 CAAAACTCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGCTCTGACACCATTGACAA 107 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| ||| || || || || ||||| ||| |||||| || | || || || Sbjct 108 TGTAAAGGCAAAAATCCAGGATAAGGAAGGCATTCCCCCGGACCAACAGCGTCTGATATT 167 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||||||| |||||||||| | || | ||||||||||| ||||||| || || Sbjct 168 TGCTGGAAAGCAGCTGGAAGATGGCCGAACCCTTGCCGATTACAATATCCAGAAGGAATC 227 Query 206364 TACTCTTCACCTTGT 206378 || || || ||||| Sbjct 228 CACGCTGCATCTTGT 242 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || ||||| || || || |||||||||||||| || || ||| Sbjct 721 CAGATCTTTGTCAAAACCCTAACAGGTAAGACCATTACTTTGGAAGTGGAGAGCTCGGAC 780 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| || || ||| || Sbjct 781 ACCATCGACAATGTGAAGGCTAAGATACAGGACAAGGAAGGCATCCCCCCTGACCAGCAG 840 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || ||||| ||| | |||||||| | || | || || ||||| | Sbjct 841 CGCCTGATCTTTGCTGGAAAACAGCTCGAAGATGGCCGAACCCTTGCTGACTACAATATT 900 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||| ||||| | || ||||| Sbjct 901 CAGAAAGAATCTACCTTGCATCTTGT 926 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| || || || || ||||| || |||||||| || || || || Sbjct 265 CAGATCTTCGTCAAAACCCTGACTGGTAAGACGATAACGTTGGAAGTTGAGAGCTCGGAT 324 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || ||||| ||||| || || || |||||||| ||| ||| ||| Sbjct 325 ACCATTGACAATGTAAAAGCCAAGATCCAGGACAAGGAAGGAATCCCGCCTGACCAGCAA 384 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || |||||||||||| | ||||| || | || |||| || ||||| | Sbjct 385 CGTCTGATATTTGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTGGCAGACTACAATATT 444 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || || || || || || || || Sbjct 445 CAAAAGGAATCAACCCTGCATCTCGT 470 >seq32362 Length=298 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| || ||| | ||||| || || ||||| |||| || || || || || Sbjct 9 CAGATATTTGTGAAGACGTTGACAGGCAAGACTATCACACTGGAGGTTGAGAGCTCCGAT 68 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || ||||| || ||| ||||| || || ||||| ||| || || || Sbjct 69 ACGATTGATAACGTAAAAGCGAAA-ATTCAGGACAAGGAAGGGATTCCACCTGATCAGCA 127 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || || || || || || || ||| |||| ||||| | ||| |||||||||| ||| | Sbjct 128 GAGGCTCATATTTGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGATTATAACAT 187 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||| || ||||| ||||||||||| ||| | || || Sbjct 188 CCAGAAGGAATCTACACTTCACCTTGTCTTGCGTCTGCG 226 >seq25614 Length=477 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || || || |||||||| || || || ||||| | || Sbjct 255 AAAACACTAACTGGAAAGACAATTACATTGGAAGTTGAGAGCTCGGACACCATTGACAAC 196 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| || ||| || || ||||||||| Sbjct 195 GTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAGCAGAGGCTTATCTTC 136 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| ||||| ||||| ||||| |||||||| | || || || || Sbjct 135 GCTGGTAAGCAGCTGGAGGATGGCAGGACCTTGGCTGATTACAATATTCAAAAGGAATCG 76 Query 206365 ACTCTTCA 206372 || || || Sbjct 75 ACCCTGCA 68 Score = 105 bits (116), Expect = 2e-17 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAA 206249 ||||| || || || |||||| | ||||| || || |||||||| | || || ||| Sbjct 477 CTCACCGGTAAGACCATCACTCTCGAAGTCGAGAGCTCTGACACCATTGACAATGTTAAA 418 Query 206250 GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGG 206309 || || ||| || || || ||||| || || ||| || | || |||||||| || Sbjct 417 GCTAA-GATCCAGGACAAGGAAGGGATCCCCCCCGACCAGCAGCGTCTGATCTTCGCAGG 359 Query 206310 AAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCT 206369 ||||||| | || || || | || | |||||||||||| |||||||||| ||||| || Sbjct 358 AAAGCAGCTTGAGGACGGCCGAACCCTTGCCGATTACAACATCCAGAAAGAATCTACCCT 299 Query 206370 TCACCTTGTT 206379 ||||||||| Sbjct 298 CCACCTTGTT 289 >seq27836 Length=415 Score = 102 bits (112), Expect = 2e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 206213 TGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAG 206272 ||||||||||||| || ||||| | || || ||| ||||| || || || || | Sbjct 1 TGGAAGTGGAAAGCTCGGACACCATTGACAATGTGAAGGCTAAGATCCAGGACAAGGAGG 60 Query 206273 GAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGA 206332 ||||| || ||| || || | ||||| ||||| |||||| |||||||||| | | Sbjct 61 GAATTCCACCTGACCAGCAGAGGTTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTA 120 Query 206333 CTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 || ||||||||||||| | ||||| || || || |||||||| || Sbjct 121 CTCTGGCCGATTACAATATTCAGAAGGAATCGACCCTTCACCTGGT 166 >seq19645 Length=690 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || || || || | || ||||| || || ||||| |||| Sbjct 363 AAGACGCTGACCGGGAAGACCATAACCCTCGAGGTGGAGAGCTCCGACACGATCGATAAC 422 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| || || || || || ||| |||||| || || || ||||| Sbjct 423 GTCAAGGCAAAGATCCAGGACAAGGAGGGGATTCCTCCGGACCAGCAGAGGCTGATCTTT 482 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || ||||| | || | || || |||||| ||||||| ||||| Sbjct 483 GCCGGGAAGCAGCTCGAGGATGGCCGCACGCTTGCGGACTACAACATCCAGAAGGAGTCG 542 Query 206365 ACTCTTCACCTTGT 206378 || ||||||||||| Sbjct 543 ACCCTTCACCTTGT 556 >seq31848 Length=311 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||| ||| || || || ||||| ||||| ||||| ||| Sbjct 40 AAGATTCAAGACAAGGAAGGTATTCCTCCAGATCAGCAGAGACTCATCTTTGCCGGGAAG 99 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| ||||| | || | |||||||| ||| ||||||| || || || || ||| Sbjct 100 CAGCTGGAGGATGGCCGAACACTCGCCGATTATAACATCCAGAAGGAATCAACCCTCCAC 159 Query 206374 CTTGTTTTGAGACTTCG 206390 ||||| ||| | || || Sbjct 160 CTTGTCTTGCGTCTGCG 176 >seq20474 Length=655 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || || ||||| ||||||| ||| ||||||||||| || | |||||||| Sbjct 344 ACCAGGTGGAGCGTGGACTCCTTCTGGATATTGTAGTCAGCCAAGGTGCGGCCATCTTCA 403 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| || |||||||| |||| Sbjct 404 AGCTGCTTACCAGCGAAGATGAGCC 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181282665654419