Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_025426.1 Length=140807 Score E Sequences producing significant alignments: (Bits) Value seq3714 104 2e-17 >seq3714 Length=3526 Score = 104 bits (114), Expect = 2e-17 Identities = 212/307 (69%), Gaps = 11/307 (4%) Strand=Plus/Plus Query 73710 TGGAGACCCTGTTAAGATTATTTGTGGTGACCCTGATGCAGATACTGAGTA--TGAACGT 73767 ||| ||||| ||||| |||||||||||||| || ||||| || | | | | | | | Sbjct 1999 TGGCGACCCAGTTAAAATTATTTGTGGTGATCCAGATGCCGA-AGTCGGCAGCCCAGCTT 2057 Query 73768 --AAAGGTGCTGTAGAAGTACTT-TGGGATACTTTTGGAGGTACTGAAACTGAAAAAGGA 73824 ||||| || || ||| | ||| ||||| ||||| ||||| || || |||| Sbjct 2058 ACAAAGGCGCGGTTGAA-TGCTTATGGGAAGTGTTTGGCGGTACAACGACAGACCAAGGC 2116 Query 73825 TATAAAGTACTAGATGAACATGTAGGATTAATCTATGGTGATTCTATTAACTATGAGCGT 73884 ||||||||||| |||| | ||| || ||||| || ||||| || |||| | || ||| Sbjct 2117 TATAAAGTACTGAATGAGCGTGTCGGCTTAATTTACGGTGACTCGATTACCCTAGACCGT 2176 Query 73885 GCTCAGCAAATTTGTGAGGGATTAAAAGCAAAAGGTTTTGCAAGTATTAACGTTGTATTA 73944 || |||| |||| || ||| | |||| ||||||||||| | ||| | || || Sbjct 2177 GCGCAGCGCATTTTAGAAGGACTTGAAGCCAAAGGTTTTGCTTCAAACAACTTGGTGTTT 2236 Query 73945 GGTGTAGGTAGTTTCTCTTAT--CAATTTAATACTCGTGATACTCATGGGTTTGCAATCA 74002 || | || ||||| | ||| | | ||| ||||| ||||| ||| ||||| | | Sbjct 2237 GGGATTGGCAGTTTTACCTATAACTACTTA--ACTCGCGATACCTTTGGATTTGCTGTGA 2294 Query 74003 AAGCAAC 74009 |||| || Sbjct 2295 AAGCGAC 2301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450254291263480