Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq6884 136 4e-27 seq10726 123 2e-23 seq2111 114 1e-20 seq10022 107 2e-18 seq776 95.1 1e-14 seq29161 93.3 4e-14 seq10355 82.4 8e-11 >seq6884 Length=2068 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142252 CAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAGCTGCATCTG 142311 |||||||| ||| | || ||||||| || || || |||| ||||| ||||| ||| Sbjct 1218 CAGATGCGCTTCGACCTCAACGAAGGCTTCCCGCTGGTCACCACCAAGAAACTGCACCTG 1277 Query 142312 AAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATCAAGTATCTT 142371 ||||||||| ||| || ||||||||||| || ||||| || |||||| || || Sbjct 1278 CGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGAAACCAACATCGCCTACCTC 1337 Query 142372 CACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAACCTCGGACCT 142431 | || |||| |||| |||||||| || |||||||| || |||||| | || || || Sbjct 1338 AAGGACAACAAGGTCAGCATCTGGGACGAGTGGGCTGACGCGAATGGCGAACTGGGGCCG 1397 Query 142432 GTCTACGGCAAGCAGTGG 142449 || ||||||||||||||| Sbjct 1398 GTGTACGGCAAGCAGTGG 1415 >seq10726 Length=1340 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142252 CAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAGCTGCATCTG 142311 |||||||| ||| | || | ||||| || || || |||| ||||| ||||| ||| Sbjct 28 CAGATGCGCTTCGACCTCAACGATGGCTTCCCGCTGGTCACCACCAAGAAACTGCACCTG 87 Query 142312 AAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATCAAGTATCTT 142371 ||||||||| ||| || ||||||||||| || ||||| || || ||| || || Sbjct 88 CGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAATATCGGCTACCTG 147 Query 142372 CACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAACCTCGGACCT 142431 | || || | || ||||||||| || ||||| || || || ||| ||||||| || Sbjct 148 AAGGACAACCAGGTGCGGATCTGGGACGAGTGGGCCGACGCGAACGGCGACCTCGGCCCG 207 Query 142432 GTCTACGGCAAGCAGTGG 142449 |||||||||||||||||| Sbjct 208 GTCTACGGCAAGCAGTGG 225 >seq2111 Length=5547 Score = 114 bits (126), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 142220 GGAACGGCGGAACGAAAGCAATCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCT 142279 ||||| |||||| ||| | || ||| |||||||||| || | || || |||| | Sbjct 2825 GGAAC--CGGAACAAAAAGCGTTTTTGGTTATCAGATGCGCTTTGACCTTTCTGAAGGTT 2882 Query 142280 TTCCTCTTCTCTCCACGAAGAAGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGT 142339 ||||| | | | || || |||||||| || || || |||||| |||||| |||||| Sbjct 2883 TTCCTATGGTTACTACCAAAAAGCTGCACCTTAAATCTATCATCTACGAACTGTTGTGGT 2942 Query 142340 TCCTCAAAGGCGATACGAACATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATG 142399 | || |||||||||||||| || ||| | | || || || || |||||||| | Sbjct 2943 TTCTGAAAGGCGATACGAATATTGGCTATTTAAATGAAAACGGAGTAAAAATCTGGGACG 3002 Query 142400 AATGGGCTGATGCCAATGGCAACCTCGGACCTGTCTACGGCAAGCAGTGG 142449 | ||||| |||| |||||| | ||||| || || || ||| | || ||| Sbjct 3003 AGTGGGCAGATGAAAATGGCGAACTCGGTCCGGTTTATGGCCATCAATGG 3052 >seq10022 Length=1431 Score = 107 bits (118), Expect = 2e-18 Identities = 382/599 (64%), Gaps = 41/599 (7%) Strand=Plus/Minus Query 142227 CGGAACGAAAGCAATCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCT 142286 ||| |||||| ||||||| || |||||||| ||| | ||| |||||||||| || Sbjct 999 CGGCACGAAAAGCGTCTTCGGCCACCAGATGCGGTTCGACCTGAACGAAGGCTTTCCGCT 940 Query 142287 TCTCTCCACGAAGAAGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAA 142346 | | || ||||| |||| || || || |||||||| ||| | ||||||||||||| Sbjct 939 GGTGACGACCAAGAAAGTGCACCTCAAATCCATCATCGTGGAATTGCTGTGGTTCCTCAC 880 Query 142347 AGGCGATACGAACATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGC 142406 ||| | ||| | | | || | || | ||| | ||||||||| |||||||| Sbjct 879 CGGCTCCAGTGACAACCACTGGCTGAAGGAACGGGGCGTGACGATCTGGGACGAATGGGC 820 Query 142407 TGATGCCAATGGCAACCTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCT 142466 || | ||| |||| || || ||||||||| ||||||| || | || Sbjct 819 GCGCGCGGACGGCGACCTGGGCCCCGTCTACGGCGTGCAGTGG----------CGCAGCT 770 Query 142467 CGTTGTCGCTGGAGATGACGTCACAGACGAACCGATCGATCAGATCCGCCGGATCAT-TA 142525 | ||| | |||| || | | ||||| |||||| ||| | | || | Sbjct 769 GGCCCACGCCG--GATGGCGGC---------CACATCGACCAGATCAGCCAGGTGATCGA 721 Query 142526 CTGACTTGAAGAAGTCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTG 142585 | | |||||||| || | || || || |||||||| ||| |||||| || | Sbjct 720 CACGC-TGAAGAAGAACCCCGACTCGCGCCGCATCATCGTCAGCGCCTGGAACGTGGCCG 662 Query 142586 AAGTCGACGACATGGCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGA 142645 | | ||| | ||||| || ||||| || | | ||||| ||| |||| | | || Sbjct 661 ATCTGGACAAGATGGCCCTCATGCCGTGCCATGCGTTCTTCCAGTTCTACGTGGCCCCGC 602 Query 142646 AG-AAGCG-----------------TCTGTCATGCCAGCTGTATCAGCGTTCGGCAGACT 142687 | | ||| ||| ||||||||||| ||||| || ||| Sbjct 601 CGCAGGCGCCCGGCGAGCGCGGCAAACTGAGCTGCCAGCTGTACCAGCGCAGCGCCGACA 542 Query 142688 GGTTCCTCGGCGTTCCGTTCAACATTGCTTCGTACGCGCTTCTCACACAGCTCATTGCTC 142747 ||||| ||||| ||||||||||| || ||||| || ||||| || | | || | Sbjct 541 TCTTCCTGGGCGTGCCGTTCAACATCGCCAGCTACGCCCTGCTCACGCACATGGTGGCGC 482 Query 142748 GCGAATGCGGTCTGGAACTCGGAGACTTCGTCCACACCTTCGGCAATTCGCACATCTAC 142806 | |||| |||||| | || |||||| || ||| |||| ||| ||||||||| Sbjct 481 AACAGTGCGACCTGGAAGTGGGCGACTTCATCTGGACCGGCGGCGATTGCCACATCTAC 423 >seq776 Length=11329 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 ||||| || |||||||| ||| | ||| | |||||||||| || || |||| |||||| Sbjct 10149 TTCGGCCACCAGATGCGCTTCGACCTGTCCGAAGGCTTTCCGCTGGTCACCACCAAGAAG 10208 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 |||| || ||||| |||||| | ||||| ||||||||||| ||||| | || | Sbjct 10209 GTGCACCTCAAGTCCATCATCCTGGAACTGCTGTGGTTCCTGCGCGGCGACAGCAATGTG 10268 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 | || || || | | | || |||||||| |||||||| | | ||| || Sbjct 10269 CGCTGGCTGCAGGAGCGCGGCTGCACCATCTGGGACGAATGGGCCCGCGAGGACGGCGAC 10328 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGG 142449 || || || ||||| ||| ||| ||| Sbjct 10329 CTGGGCCCGGTCTATGGCGTGCAATGG 10355 >seq29161 Length=379 Score = 93.3 bits (102), Expect = 4e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 |||| || |||||||| ||| | ||||| | || ||||| || | |||| |||||| Sbjct 184 TTCGCCCACCAGATGCGCTTCGACCTGGCCGACGGTTTTCCCCTGGTGACCACCAAGAAG 125 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 || || ||||||||||| ||| | ||||||||||| | ||||| || |||||| Sbjct 124 TGCCACCTCAAGTCGATCATTCACGAGTTGCTGTGGTTCCTGCAGGGCGACACCAACATC 65 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 ||||| || | || | ||| |||||||| || ||||| || | || ||| || Sbjct 64 AAGTACCTGAAGGACAATGGCGTACGCATCTGGGACGAGTGGGCCGACGAGAACGGCGAC 5 Query 142423 CTCG 142426 |||| Sbjct 4 CTCG 1 >seq10355 Length=1388 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 142241 TCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGA 142300 ||||||| | |||||||||||| |||| | ||||||| || | || |||| |||| Sbjct 1273 TCTTCGGCTACCAGATGCGTTTCGATCTTTCAGAAGGCTTCCCGGTGCTGACCACCAAGA 1332 Query 142301 AGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATAC 142355 |||| |||||| || |||||| || || ||||||||||| || ||||| || Sbjct 1333 AGCTTCATCTGCGCTCCATCATCCATGAGCTGCTGTGGTTCCTGAAGGGCGACAC 1387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500276859486640