Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq23194 86.0 2e-12 seq6074 86.0 2e-12 >seq23194 Length=554 Score = 86.0 bits (94), Expect = 2e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 295 GCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGCTT 354 ||| || | | ||||| |||||| ||||||||||||| || |||||| || | ||||| Sbjct 96 GCCCTCGACGTACACCGAGCTGCCCTTGCGCAGGTACTCGCCGGCGATCTCGCCGAGCTT 155 Query 355 TCCGAAGATGACCACGCGGTGCCATTCCGT 384 ||||||| ||||||||||||||||| || Sbjct 156 GCCGAAGAACACCACGCGGTGCCATTCGGT 185 >seq6074 Length=2299 Score = 86.0 bits (94), Expect = 2e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 295 GCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGCTT 354 |||||| | | | ||| |||||| ||||||||||||| || |||||| || | ||||| Sbjct 2138 GCCTTCGACGTAGACCGAGCTGCCCTTGCGCAGGTACTCGCCGGCGATCTCGCCGAGCTT 2079 Query 355 TCCGAAGATGACCACGCGGTGCCATTCCGT 384 ||||||| ||||||||||||||||| || Sbjct 2078 GCCGAAGAACACCACGCGGTGCCATTCGGT 2049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135344457055134