Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_025440.1 Length=134369 Score E Sequences producing significant alignments: (Bits) Value seq23727 123 2e-23 seq29118 102 7e-17 >seq23727 Length=536 Score = 123 bits (136), Expect = 2e-23 Identities = 304/461 (66%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 76025 ATAAACTTCGAATGGGCTAACTCATCACGATTAATGAAGCTAATGATTTTACCTGTTCCC 76084 || ||||| | |||||| | ||||||||| || |||||||| ||||| || || || || Sbjct 31 ATGAACTTGGTATGGGCCAGCTCATCACGGTTGATGAAGCTGATGATCTTGCCGGTGCCG 90 Query 76085 GTCATCTTGTTTTGACGAACAAGGTTATAGAAGTAAGCAAAACCGCTGTAGAAATTAATA 76144 ||||| ||| || || || ||||| |||||||| || || ||| ||||| || || Sbjct 91 GTCATGCGGTTCTGCCGCACCAGGTTGTAGAAGTAGGCGAAGCCGGAATAGAAGTTGATG 150 Query 76145 CCCTCTAAGATAGATGATTGTACTAAAGCTTTTACCATATTCTCAGGTGTTTTGTTATTC 76204 || || | ||| || || || | || | | | || |||| | || || | | Sbjct 151 CCTTCCAGGATCGAGGACTGGATCAACGACCTGAGCAGCGTCTCGGCAGTCTTCTCGCGC 210 Query 76205 ATGAAATCGTCATAAGACTTCATAATAGGTGCATTACGTTTAATAATCGTAGGGTGTGTT 76264 |||||||||||||| | ||| || || || || || || || || || ||||| || Sbjct 211 ATGAAATCGTCATACGCACCCATGATCGGCGCGTTGCGCTTGATGATGGTCGGGTGGGTA 270 Query 76265 CTAGCTTCCTCAAATACTCGATTCTGCTCTTGTAAGTTAGTAATAGAAGCAAGTACATAA 76324 | || ||| || | || ||||| | | | || || || || || || || || Sbjct 271 CGGGCGATCTCGAAAATGCGGTTCTGGTTCGGCAGGTCGGTGATCGAGGCCAGCACGTAG 330 Query 76325 GAATAACTCTCATTATGAATAGCTTCTTGTTGTGCAATAATAGCTGTAATAGCATGAACA 76384 || ||||| || || || |||| || || | || || || | | ||||| | Sbjct 331 CTGTAGCTCTCGTTGTGGATCACTTCCTGCTGGCCGATGATCGCGGCGTTGGCATGCGCG 390 Query 76385 GAGGCATCACTGACATACTCTGCGATATTATAAATAAAACGTGTTTGGGGTGAGTCAAGT 76444 | | ||| ||| ||||| || | || || || || || || || ||||| || || Sbjct 391 GCCGGATCGGTGATGTACTCGGCCACGTTGTAGATGAAGCGCGTCTGCGGTGAATCGAGC 450 Query 76445 GTAGCTAAAAGTCCGATAATGGAGTCAAACGCATATTTCTC 76485 || || | || ||||| || | ||| | |||| ||||| Sbjct 451 GTGGCCAGCAGGCCGATGATCGCGTCGTAGGCATTCTTCTC 491 >seq29118 Length=380 Score = 102 bits (112), Expect = 7e-17 Identities = 171/245 (70%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 75663 CTCATAAGTCATCGAACCCATTGTCTAAGTTTGTTTTCTTGTAACTAGAGTTACGCATTT 75722 |||| | ||| ||||| || ||||| | ||| || ||||||||||| | || ||||| | Sbjct 374 CTCAGAGGTCGTCGAAGCCGTTGTCGACGTTGGTCTTCTTGTAACTTGCATTGCGCATCT 315 Query 75723 CGAAAAAGTCGGTTTTTGTTTCTGTAAAGTTATCGGCGTAAGCTTTAATCCATGTCATAG 75782 |||| |||||||| || || || || ||||| || ||||| || || ||||| | ||| Sbjct 314 CGAAGAAGTCGGTCTTGGTCTCGGTGAAGTTGTCAGCGTAGGCCTTGATCCACGGCATCA 255 Query 75783 AATTTTCTGT-GTGACCTTGATACATTGGTTGAAGACCTAGCATCCCTAACATTTTATTA 75841 || || || ||| | || |||| | | | || ||||| || ||| || || Sbjct 254 CGTTGTCGGTGGTGTCGCTG-TACAGGCGCTCGATGCCGAGCATGCCGGCCATCTTGTTG 196 Query 75842 GCACGATATTTTACATAGTCTAACATCTCTTCCACATCAATTCCTTCAATGCCCTGTAGT 75901 || || || || || ||| ||| || |||||||| || || || ||||| | ||| Sbjct 195 GCGCGGTACTTCACGTAGCGCGTCATTTCCTCCACATCGATGCCGTCGATGCCGTCCAGT 136 Query 75902 ACCTC 75906 || || Sbjct 135 ACTTC 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429669815799070