Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq10753 109 1e-18 seq7046 109 1e-18 >seq10753 Length=1336 Score = 109 bits (120), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 73497 GTGGCAGAGTGGTTTAATGCAACGGTCTTGAAAACCGTCGAGGGTGAAAGTCCTCCGTGA 73556 ||||||||| ||||||||||| ||||||||||||||| |||||||| |||||||||||| Sbjct 593 GTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACCGACGAGGGTGTGAGTCCTCCGTGA 652 Query 73557 GTTCAAATCTCACCTTCACCGCCAA 73581 |||| ||||||||| ||||||| Sbjct 653 GTTCGAATCTCACCGCTTCCGCCAA 677 >seq7046 Length=2020 Score = 109 bits (120), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 73497 GTGGCAGAGTGGTTTAATGCAACGGTCTTGAAAACCGTCGAGGGTGAAAGTCCTCCGTGA 73556 ||||||||| ||||||||||| ||||||||||||||| |||||||| |||||||||||| Sbjct 679 GTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACCGACGAGGGTGTGAGTCCTCCGTGA 738 Query 73557 GTTCAAATCTCACCTTCACCGCCAA 73581 |||| ||||||||| ||||||| Sbjct 739 GTTCGAATCTCACCGCTTCCGCCAA 763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1114663414112391