Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_025462.1 Length=99730 Score E Sequences producing significant alignments: (Bits) Value seq3205 179 2e-40 seq2111 84.2 1e-11 >seq3205 Length=3996 Score = 179 bits (198), Expect = 2e-40 Identities = 220/297 (74%), Gaps = 4/297 (1%) Strand=Plus/Minus Query 19894 TGGGTTTGATCAGATTGAGTGGGTTATTAATGAGATTAAAACAAACCCAACATCACGAAG 19953 ||| ||||| || ||| | ||| | |||||||| || ||||| || || | ||||| | Sbjct 2497 TGGTTTTGACCAAATTAAATGGTTAATTAATGAAATCAAAACCAATCCGAATTCACGCCG 2438 Query 19954 ATTAATTGTATCAGGTTGGAATCCTCATGATGTTGCAGATGTAGATTTACCACCTTGCCA 20013 |||||| | ||||| |||||||| |||| | || | | || | ||||||||||||||| Sbjct 2437 TTTAATTATTTCAGGCTGGAATCCAAATGAAGCTGGACAAGTGGCTTTACCACCTTGCCA 2378 Query 20014 TACACTATTTCAATTCTTTGTGAAAGATGGTAAATTATCTTGCCAGTTGTATCAACGAAG 20073 || || |||||||| || || ||||| ||||| || |||||| | |||||||| || Sbjct 2377 CACGCTTTTTCAATTTTTCGTACAAGATAACAAATTGTCATGCCAGCTTTATCAACGTAG 2318 Query 20074 TGCTGACTTATTACTTGGTGTTCCATTTAATATTGCATCTTATGCTTTACTTACACACTT 20133 ||| ||| | || | || ||||| ||||| ||||| |||||||||||| || ||| | Sbjct 2317 TGCAGACGTGTTTTTAGGGGTTCCTTTTAACATTGCCAGTTATGCTTTACTCACTCACAT 2258 Query 20134 AGTTGCATTAGAATGTG-GGCTTA-ATGTTGGTGAGTTTGTTTGGGTTGGTGGTGAT 20188 |||| | | |||| || ||| || ||||| ||||||||| || |||||| Sbjct 2257 GATTGC--TCAAGTGTGCGGTTTAGGAGTCGGTGACTTTGTTTGGACAGGCGGTGAT 2203 >seq2111 Length=5547 Score = 84.2 bits (92), Expect = 1e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 20003 CCACCTTGCCATACACTATTTCAATTCTTTGTGAAAGATGGTAAATTATCTTGCCAGTTG 20062 ||||| ||||| | | ||||| || | ||| |||||| |||||||| |||||||| Sbjct 3218 CCACCCTGCCACGCCTTTTTTCAGTTTTATGTAGCAGATGGCAAATTATCCTGCCAGTTA 3277 Query 20063 TATCAACGAAGTGCTGACTTATTACTTGGTGTTCCATTTAATATTGCATCTTATGCTTTA 20122 |||||| |||| || || | || | || || || ||||| || ||||||||||| ||| Sbjct 3278 TATCAAAGAAGCGCCGATATCTTTTTAGGAGTGCCTTTTAACATAGCATCTTATGCATTA 3337 Query 20123 CTTACA 20128 | ||| Sbjct 3338 TTGACA 3343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318873026180489