Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq451 131 2e-25 seq14623 95.1 1e-14 seq7414 84.2 2e-11 >seq451 Length=16219 Score = 131 bits (144), Expect = 2e-25 Identities = 346/525 (66%), Gaps = 5/525 (1%) Strand=Plus/Plus Query 147888 GTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTT---TCCGCCCTG 147944 ||| || ||||| ||||| | ||||| || | | |||||| || || ||| || || Sbjct 8926 GTCTGCATGCCATGGTTCCAAGTAGATTGCAAAGGAACCTTTGCGTTTACCTCCACCTTG 8985 Query 147945 GTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGT 148004 ||| |||| || || ||| |||||||||||||| |||||| | ||| | | || Sbjct 8986 GTCCACATACCGAGCCGTGTCGTTAAACACGCGCAACATGGGGATGATACCGTTGGAAGA 9045 Query 148005 GCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAAT 148064 ||||| || | ||| | |||| ||||| | | ||||| | | | ||||| Sbjct 9046 CCCGTTAGTACCACGGATGTAGCTGTTCGTAGCTCGGATATTGTGCATGCTGATCCCAAT 9105 Query 148065 GCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGAT 148124 || || | ||||||| || ||| || | |||||| ||||| || || || Sbjct 9106 ACCTCCCGCCCACTTTGAGATACAAGCACATTGCTTCAATGTATCATAGATTCCTTCAAT 9165 Query 148125 GCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGC 148184 || | || | | |||| |||||||||||| | | |||||| | || || || Sbjct 9166 TGAATCATCTTGCATGGCAAGTAAAAAACACGAAGATAATTGCGGCCGTGGAGTGCCAGC 9225 Query 148185 CGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATC-ATGCGATACGTCT 148243 || | ||||| |||| || ||||| || |||||| |||| || || ||||||| Sbjct 9226 ATTAAACAACGTGGGCGTCGCATGGGTAAAGAACTTTTGAGACATCAATTCG-TACGTCT 9284 Query 148244 CAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCT 148303 | | ||| ||| |||| | ||||| || || || |||||||| | ||| |||| Sbjct 9285 CTAAAGCTGCTTGAATGTTGCTCTTATGAATCCCAAGAGCAACGCGCATAATCATTTGCT 9344 Query 148304 GTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGT 148363 | |||||||| | |||| || | || ||| || || | || || ||||| Sbjct 9345 GGGGTCGTTCAACCACTTTGCCATTCACGCGGAAAAGGTAACCTCTCTCCAGTGTTTTAA 9404 Query 148364 AACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 | |||||||| | ||| ||||| || | |||| | ||| |||| Sbjct 9405 ACCCAAAGTAATCGTACTCAAAGTCCCGGTCGTGAATGATTGCCG 9449 >seq14623 Length=969 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 131920 ATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTG 131979 ||| | | |||| || |||||||| |||||||| || ||| || ||||||||||| Sbjct 465 ATGCAGGGTTGATTCCTTTTGAATATTGTAGTCTGCCAGGGTTCGGCCGTCTTCGAGCTG 406 Query 131980 TTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT 132039 || |||| | | || ||||| || || || || || || ||||| || || || || Sbjct 405 CTTTCCGGCAAATATCAGACGTTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATCTT 346 Query 132040 TTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGT 132099 ||| | | || | ||||| | ||| ||||| | ||| | ||| |||||||| Sbjct 345 GGCTTTTACATTGTCAATGGTATCCGAGCTCTCAACTTCCAACGTTATCGTCTTACCAGT 286 Query 132100 CAGAGTTTTTATGAAAATCTGCATG 132124 ||| ||||| | ||| ||||||||| Sbjct 285 CAGGGTTTTGACGAAGATCTGCATG 261 >seq7414 Length=1926 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||||||| || || ||| || ||||| || |||| Sbjct 31 GACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGGCCATCCTCCAGCTGCTTGCCGGCG 90 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || | |||||| || || ||||| |||||||| || || ||| || |||| Sbjct 91 AAAATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCGTCTTCACG 150 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | || ||| || || | || | ||| || || |||| || || Sbjct 151 TTGTCGATCGAGTCCGACGACTCGACGTCAAGAGTGATCGTCTTGCCCGTCAACGTCTTC 210 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 211 ACGAAAATCTGCAT 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476399471432040