Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq10726 183 4e-41 seq1969 159 4e-34 seq776 143 3e-29 >seq10726 Length=1340 Score = 183 bits (202), Expect = 4e-41 Identities = 217/294 (74%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 146946 GTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCAC 147005 ||||||||| ||||| || ||||| ||||| ||| |||||||| | || ||||| Sbjct 552 GTGCGCGTCACCCAGCGTATGCACGAAGTCGCCCACGCCCAGGCCGGTGGCCTGCGCCAC 493 Query 147006 CATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCC 147065 ||||| ||| ||||||| ||||||||| |||||||| || || || ||| ||||| || Sbjct 492 CATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGAAGATGTCGCC 433 Query 147066 CGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGAT 147125 | |||||| |||||||| ||||| ||||| ||||||| |||||| ||||| | Sbjct 432 GCTGCGCTGGTAGAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAACAGGTT 373 Query 147126 GTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAG 147185 |||||||||| ||||||||| | || || | ||||||||| ||||||||| Sbjct 372 GTGGCACGGCATCAGCGCCATCTGCGAAAGCTCGCCCACGTTCCAGGCGCTGACCACCAG 313 Query 147186 CCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTC 147239 ||| | |||||||| | ||| ||||| || | | |||| || |||||| Sbjct 312 CCGGCGCGAATCGGGGTTGCGCTTGATCTCGTCCACCAGCCACTGCATCTGGTC 259 >seq1969 Length=5862 Score = 159 bits (176), Expect = 4e-34 Identities = 287/416 (69%), Gaps = 10/416 (2%) Strand=Plus/Plus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || |||||||||||||| | || ||||| || || || | || | ||| | || Sbjct 2150 AGTGGCTCCACGTGGTTCAAATACACGTGTGCATCACCAATTACATGTATAAACTTGCCT 2209 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTG 147039 || || || || ||| || || |||| || || |||| ||||||||| ||||| Sbjct 2210 GGTTTTAGCCCTACCACTTGCGCTACCAAACGCGTCAGAAGCGCGTAGCTGGCAATGTTA 2269 Query 147040 AAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG 147099 || || || || || |||||||| | |||| |||||||| ||||||||| ||||| || Sbjct 2270 AATGGCACGCCAAGTCCCATGTCGGCTGACCGCTGGTACATCTGGCACGACAGCTCACCA 2329 Query 147100 TCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCC 147159 || || ||||| ||||| || | ||||||||||| || |||||||| | || || Sbjct 2330 TCTGCTACGTAGAACTGACAGAACATGTGGCACGGTGGTAGCGCCATTTCTTTGAGATCG 2389 Query 147160 GCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCG 147219 || |||||||| ||||| | || | ||| | | || ||| | | || | | Sbjct 2390 GCAGGGTTCCAAGCCGAAAGTACAATCCGGCGGTCAGTAGGATTCGTACGGAGCTTATGG 2449 Query 147220 ATAACCCACCTC----AGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCA 147274 || |||||| |||||||||||||| ||||| |||| | | | ||| ||| Sbjct 2450 AT----CACCTCGGCGAGCTGGTCCACGCCTTGGCCAGTGTAG-TCGGCGTGCATATCCG 2504 Query 147275 CGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCG 147330 |||| |||| ||||| || | ||| || || || ||||| || || || || ||| Sbjct 2505 TGTACTTGGCGCCAAAATGACGCCATTGAAAACCATACACCGGTCCAAGATCCCCG 2560 >seq776 Length=11329 Score = 143 bits (158), Expect = 3e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 146998 TGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCC 147057 ||||||| ||||| ||| ||||||| ||||||||| ||||||||||| || |||||| Sbjct 10630 TGGGCCAGCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAG 10571 Query 147058 ATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGG 147117 |||||| | | |||||| |||||||| ||||| |||||||||||||| |||||| Sbjct 10570 ATGTCCGCGCTGCGCTGGTATAGCTGGCAGCTGAGCTTGCCGTCGGCCACGTAGAACTGG 10511 Query 147118 CACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAG 147177 | | | |||||| ||| |||||||| |||||||| || ||||||||| | Sbjct 10510 AAGAAGGCGTGGCAGGGCATGAGCGCCATCTGCGGCAGGTCGGCCACGTTCCAGGCGCTG 10451 Query 147178 ACCACCAGCCGCCTGCTCTCGGGGTTCCTCTT 147209 || | | || | ||| || ||||| ||||| Sbjct 10450 ACGATGATGCGGCGGCTGTCCGGGTTGCTCTT 10419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583228792749600