Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_026584.1 Length=109871 Score E Sequences producing significant alignments: (Bits) Value seq1495 132 3e-26 seq20114 104 2e-17 seq7611 104 2e-17 seq1674 95.1 8e-15 seq28760 87.8 1e-12 seq9754 87.8 1e-12 >seq1495 Length=7139 Score = 132 bits (146), Expect = 3e-26 Identities = 235/336 (70%), Gaps = 9/336 (3%) Strand=Plus/Plus Query 97504 CGTCGGATACGAAAGCGCCCTGTATCCGGATGG-CACCCCGCGCCCCCACGGGCAGGAAT 97562 ||||||| ||||| ||||| || | ||||||| || ||| || | || || | | Sbjct 6626 CGTCGGAGACGAAGGCGCCGTGGACGCGGATGGGCAGACCGGTGCCGCT-GGCCATGTAG 6684 Query 97563 AACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTA 97622 | | ||| ||||| |||| ||| |||||| || || ||| ||||| ||||| Sbjct 6685 AGCATGTCGCCCATGCCCAGCAGCGCCTCGGCGCCCATCTGGTCGAGGATGGTGCGGCTG 6744 Query 97623 TCGGTGAGTGATGCTGTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCT 97682 ||| | || | | ||| | || || | ||| | ||||| ||||| ||||| Sbjct 6745 TCGATCTTGGAGCCGACCGAGAAGGCGATCCGCGTCGGGATGTTGGCCTTGATCAGGCCG 6804 Query 97683 GTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATACCGGCTGCGCGC 97742 |||| ||||||||| || |||||||||||||||| || || || ||||| || ||| Sbjct 6805 GTGATCACATCCACGCTCGGACGCTGCGTCGCCAGGATCAGGTGGATGCCGGCGGCCCGC 6864 Query 97743 GCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCGACTTCTTTCTTGTAGCCGCCCATCA 97800 ||||||||||| | |||| | || ||| |||||| || |||||| | |||||| Sbjct 6865 GCCTTCTGGGCCAGGCGGGCGATCAGTT--CCTCGA--TC-TTCTTGCCCACCACCATCA 6919 Query 97801 TGAGGTCTGCGAGTTCGTCGACCACTACCACGATGT 97836 | || || || || ||||||| || |||||||||| Sbjct 6920 TCAGATCGGCCAGCTCGTCGATGACGACCACGATGT 6955 >seq20114 Length=670 Score = 104 bits (114), Expect = 2e-17 Identities = 143/199 (72%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 97947 TCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATC 98006 ||||||||||||||| || ||||| ||||| || | ||| | ||||||||| |||| Sbjct 16 TCGGTGACCACCGGCGCCAGCAGGTGCGGGATCCCCTGGTAGACGCTGAGTTCCAGCATC 75 Query 98007 TTCGGGTCGATCATGATGAGCTTGACCCGATCA---GGATTGGCTCGGTAGAGCATGGAA 98063 |||||||||||||||| || || | | || || || ||| |||| | Sbjct 76 TTCGGGTCGATCATGA---GCATGCGCAGGTCTTTCGGCGACGCCTTGTACAGCAGGCTC 132 Query 98064 ACCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGG 98123 | || ||||| ||||| | ||||||||||| ||||||| ||| || ||||||||| Sbjct 133 AGCACCATCGCGTTGACCGCGACCGACTTGCCCGAGCCGGTGGTGCCGGCGACCAGCAGG 192 Query 98124 TGGGGCATTTTGGCCAGGT 98142 || ||||| ||||||| Sbjct 193 TGCGGCATGCGCGCCAGGT 211 >seq7611 Length=1885 Score = 104 bits (114), Expect = 2e-17 Identities = 143/199 (72%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 97947 TCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATC 98006 ||||||||||||||| || ||||| ||||| || | ||| | ||||||||| |||| Sbjct 259 TCGGTGACCACCGGCGCCAGCAGGTGCGGGATCCCCTGGTAGACGCTGAGTTCCAGCATC 200 Query 98007 TTCGGGTCGATCATGATGAGCTTGACCCGATCA---GGATTGGCTCGGTAGAGCATGGAA 98063 |||||||||||||||| || || | | || || || ||| |||| | Sbjct 199 TTCGGGTCGATCATGA---GCATGCGCAGGTCTTTCGGCGACGCCTTGTACAGCAGGCTC 143 Query 98064 ACCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGG 98123 | || ||||| ||||| | ||||||||||| ||||||| ||| || ||||||||| Sbjct 142 AGCACCATCGCGTTGACCGCGACCGACTTGCCCGAGCCGGTGGTGCCGGCGACCAGCAGG 83 Query 98124 TGGGGCATTTTGGCCAGGT 98142 || ||||| ||||||| Sbjct 82 TGCGGCATGCGCGCCAGGT 64 Score = 100 bits (110), Expect = 2e-16 Identities = 127/172 (74%), Gaps = 7/172 (4%) Strand=Plus/Minus Query 97671 TTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATA 97730 ||||| ||||| |||| || ||||| || || |||||||| ||||||| || || || Sbjct 631 TTGATCAGGCCGGTGATGACGTCCACCGACGGGCGCTGCGTGGCCAGGATCAGGTGGATG 572 Query 97731 CCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCGACTTCTTTCTTGT 97788 ||||| |||||||||||||| || | |||| | || ||| |||||| | |||||| Sbjct 571 CCGGCGGCGCGCGCCTTCTGCGCCAGGCGGGCGATCAGTT--CCTCGA---CCTTCTTGC 517 Query 97789 AGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGG 97840 | || |||||| | ||| |||| |||||| | | | |||||| |||| Sbjct 516 CGACGATCATCATCATGTCGGCGAATTCGTCTATGAAGATGACGATGAAGGG 465 >seq1674 Length=6551 Score = 95.1 bits (104), Expect = 8e-15 Identities = 117/158 (74%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 97664 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 97723 ||||| ||||| ||||| |||| || |||||| ||| ||||| || ||||||| || Sbjct 3745 GTTGGCCTTGATCAGGCCGGTGATCACGTCCACGCTGGGGCGCTGGGTGGCCAGGATCAG 3686 Query 97724 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 97783 || || ||||| ||||| ||||||||||| | ||| | || |||||| || || Sbjct 3685 GTGGATGCCGGCCGCGCGGGCCTTCTGGGCCAGGCGCGCGATCAGCTCCTCGA--TC-TT 3629 Query 97784 CTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGA 97821 |||| | | ||||||| ||||| || || ||||||| Sbjct 3628 CTTGCCGACCACCATCATCAGGTCGGCCAGCTCGTCGA 3591 >seq28760 Length=390 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 97944 GGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACC 98003 || ||||||||||| | || || || |||||| | ||||| | ||||||||| | Sbjct 176 GGGTCGGTGACCACGTCCGCCAGCAGATGCGGGATATCCTTGTACATGCTGAGTTCCAGC 235 Query 98004 ATCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAA 98063 ||||| || ||||||||||| | | | |||| || || |||||||||| || Sbjct 236 ATCTTGGGATCGATCATGATCATGCGGCACTGATCCGGGGTGAGCCGGTAGAGCAGCGAC 295 Query 98064 ACCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGG 98123 | | ||| |||||| | ||||||||||| ||||||| || || || ||||| Sbjct 296 AGGATCATGCAGTTGAGCCCGACCGACTTGCCCGAACCGGTGGTCCCGGCGACGAGCAGA 355 Query 98124 TGGGGCAT 98131 || ||||| Sbjct 356 TGCGGCAT 363 >seq9754 Length=1476 Score = 87.8 bits (96), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 97658 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 97717 ||| | ||||| ||||| ||||| |||| || ||||| || || |||||||| ||||| Sbjct 1153 CGGGATGTTGGCCTTGATCAGGCCGGTGATCACGTCCACCGACGGGCGCTGCGTGGCCAG 1212 Query 97718 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 97777 || || || || ||||| || ||||||||||| || | ||| | | | ||| | Sbjct 1213 GATCAGGTGGATGCCGGCCGCACGCGCCTTCTGTGCCAGGCGCGC---GATCAGCTCTTC 1269 Query 97778 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGA 97821 | |||||| | || |||||| | ||| |||| |||||||| Sbjct 1270 CACCTTCTTGCCGACGATCATCATCATGTCGGCGAATTCGTCGA 1313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351310170541528