Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_026594.1 Length=56537 Score E Sequences producing significant alignments: (Bits) Value seq15580 127 7e-25 seq11926 127 7e-25 seq7623 109 2e-19 >seq15580 Length=904 Score = 127 bits (140), Expect = 7e-25 Identities = 231/330 (70%), Gaps = 10/330 (3%) Strand=Plus/Plus Query 36713 TCGGCCCTGCGGGCACCGGGAAGACCTTCCTGGCCATTCAC--CACGGACTGCGCCTGCT 36770 ||||||| || || ||||| ||||||| |||||| | | | ||| | || ||| Sbjct 561 TCGGCCCCGCCGGGACCGGCAAGACCTACCTGGCGGTCGCCTGCGCGGTCGATGC--GCT 618 Query 36771 GGAGGCCAAGGAAATCCAGCGACTCGTCATCACTCGCCCCGCCGTCGAGGCCGAGGAGAA 36830 |||| || | | || || |||| |||| ||||| ||||| ||||||| ||| Sbjct 619 GGAGCGCAGCAACGTGCAACGCATCGTGCTCACGCGCCCGGCCGTGGAGGCCGGCGAGCG 678 Query 36831 GCTCGGCTACCTGCCCGGCGGCATCGAAG-AGAAGATGGCTCCGTACCTGATCCCGATGC 36889 || |||| |||||| |||| | | || | ||||| ||| ||||||||| |||| || Sbjct 679 CCTGGGCTTCCTGCCGGGCGACCT-GACGCAGAAGGTGGACCCGTACCTGCGCCCGCTGT 737 Query 36890 TGGACGCGGTGATCGACCTGGTTGGCC-CGACGATGGCCA-AGCGCCTGCAGGAGACCCG 36947 |||||| || ||||||| | || |||| | | || | || | | | | || Sbjct 738 ACGACGCGCTGTACGACCTGATGGGTTACGACAAGGTGCAGAAGGCGTTCGAGCGCAACG 797 Query 36948 CCAGCTCGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAACCTTCAACGACACGTTCCT 37007 | ||||||||||||||||||||||| |||||| || || || ||||| || | ||| | Sbjct 798 C--GCTCGAGATCGCCCCGCTGGCCTTCATGCGCGGGCGCACGCTCAACAACGCCTTCAT 855 Query 37008 CATCGCCGACGAGATGCAGAACGCCACCCC 37037 |||| |||||| ||||||| |||| || Sbjct 856 CATCCTGGACGAGGCGCAGAACACCACGCC 885 >seq11926 Length=1206 Score = 127 bits (140), Expect = 7e-25 Identities = 224/321 (70%), Gaps = 8/321 (2%) Strand=Plus/Plus Query 36805 CGCCCCGCCGTCGAGGCCGAGGAGAAGCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAG 36864 ||||| || || ||||||| || |||||||| | ||||||||||| | | ||||| Sbjct 3 CGCCCGGCGGTGGAGGCCGGCGAAAAGCTCGGTTTCCTGCCCGGCGACCTGACCCAGAAG 62 Query 36865 ATGGCTCCGTACCTGATCCCGATGCTGGACGCGGTGATCGACCTGGTTGGCCCGACGA-- 36922 | | ||| |||||| |||| || |||||| || ||| || | ||| | || Sbjct 63 GTCGATCCCTACCTGCGCCCGCTGTACGACGCGCTGTACGAGATGCTGGGCGTGGAGAAG 122 Query 36923 -TGGCCAAGCGCCTGCAGGAGACCCGCCAGCTCGAGATCGCCCCGCTGGCCTACATGCGA 36981 ||| ||||| ||| || ||| | | || |||||||||| ||| ||||||||||||| Sbjct 123 GTGGTCAAGCTGCTGGAGAAGAAC-GTCA--TCGAGATCGCGCCGTTGGCCTACATGCGC 179 Query 36982 GGCCGAACCTTCAACGACACGTTCCTCATCGCCGACGAGATGCAGAACGCCACC-CCGCG 37040 || || || | |||||| ||||| | ||| ||||||| ||||||| ||||| || | Sbjct 180 GGGCGCACGCTGAACGACGCGTTCGTGATCCTCGACGAGGCGCAGAACACCACCATCGAG 239 Query 37041 ACAGGCCGCGCTGCTGGTGACCCGCCTGGGCTTCGGAACGCGGGCCGTCTTGAACGGTGA 37100 ||| | || | |||| ||| | |||| ||| | |||||| | | ||| || Sbjct 240 -CAGATGAAGATGTTCCTGACGCGCATCGGCTACGGCAGCACCGCCGTCGTCACCGGCGA 298 Query 37101 CCCGGCCCAGTGCGACCTCCC 37121 || | ||||| |||||| || Sbjct 299 CCTGACCCAGATCGACCTGCC 319 >seq7623 Length=1882 Score = 109 bits (120), Expect = 2e-19 Identities = 280/417 (67%), Gaps = 16/417 (4%) Strand=Plus/Plus Query 36713 TCGGCCCTGCGGGCACCGGGAAGACCTTCCTGGCCATT--CACCACGGACTGCGCCTGCT 36770 ||||||| || |||||||| ||||||||||||||| | || | ||| | || ||| Sbjct 1121 TCGGCCCGGCCGGCACCGGCAAGACCTTCCTGGCCGTGGCCAGCGCGGTCGAAGC--GCT 1178 Query 36771 GGAGGC--CAAGGAAATCCAGCGACTCGTCATCACTCGCCCCGCCGTCGAGGCCGAGGAG 36828 | | | || || | ||||| | || | ||||| || || || |||| ||| Sbjct 1179 GAACGAATCACGGGTA--CAGCGCTTGATCCTGGTGCGCCCGGCGGTGGAAGCCGGCGAG 1236 Query 36829 AAGCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGATG 36888 ||||| |||| ||||||||||| | | ||||| | | || ||||| ||| || Sbjct 1237 AAGCTGGGCTTCCTGCCCGGCGACCTGAGCCAGAAGGTCGACCCCTACCTACGACCGCTG 1296 Query 36889 CTGGACGCGGTGATCGACCTGGTTGGCCCGACGA---TGGCCAAGCGCCTGCAGGAGACC 36945 ||||| || ||| || | ||| | || ||| ||||| ||| | ||| | Sbjct 1297 TACGACGCCCTGTACGAGATGATGGGCGTGGAGAAGGTGGTCAAGCTGCTGGAAAAGAAC 1356 Query 36946 CGCCAGCTCGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAACCTTCAACGACACGTTC 37005 | || |||| ||||| ||||||||||||||||| ||||| || ||||||| | ||| Sbjct 1357 -GTCA--TCGAAATCGCGCCGCTGGCCTACATGCGTGGCCGCACGCTCAACGATGCCTTC 1413 Query 37006 CTCATCGCCGACGAGATGCAGAACGCCACC-CCGCGACAGGCCGCGCTGCTGGTGACCCG 37064 | ||| ||||| |||||| ||||| || | ||| | || | ||||||| Sbjct 1414 GTGATCCTGGACGAAGCACAGAACACCACCATCGAG-CAGATGAAGATGTTCCTGACCCG 1472 Query 37065 CCTGGGCTTCGGAACGCGGGCCGTCTTGAACGGTGACCCGGCCCAGTGCGACCTCCC 37121 ||| |||| ||| | ||||| | | ||| |||| | ||||| ||||||||| Sbjct 1473 CCTCGGCTACGGCTCCACCGCCGTGGTCACCGGCGACCTGACCCAGACCGACCTCCC 1529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180720499117482