Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq7414 150 2e-31 seq14623 127 2e-24 seq19645 107 2e-18 seq34320 104 2e-17 seq28136 89.7 5e-13 seq25614 89.7 5e-13 >seq7414 Length=1926 Score = 150 bits (166), Expect = 2e-31 Identities = 171/227 (75%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTG 134554 || || | ||| ||||| ||||| || ||||| |||||||||||||||| |||| ||| | Sbjct 7 AGACGAAGCACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAAC-GTGCG 65 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| ||||| || ||||||||||||||||| || || || |||||||| Sbjct 66 GCCATCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATGCCTTC 125 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || ||||| || || || ||| | | ||| ||||| || ||||| ||||| Sbjct 126 CTTGTCCTGAATCTTCGTCTTCACGTTGTCGATCGAGTCCGACGACTCGACGTCAAGAGT 185 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721 || || || || || || || || |||||||| ||||| |||| || Sbjct 186 GATCGTCTTGCCCGTCAACGTCTTCACGAAAATCTGCATCTTGTCTT 232 >seq14623 Length=969 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || || || |||||||||||||| || || ||||| ||| || Sbjct 260 CCACCCCTCAGACGGAGGACAAGATGCAGCGTGGATTCCTTCTGGATATTGTAATCGGCA 201 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| || || ||||| |||| |||||| || || || || Sbjct 200 AGGGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGA 141 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || |||||| || || ||| | ||||| || || || Sbjct 140 ATGCCTTCCTTATCCTGGATTTTTGCCTTTACATTGTCAATGGTGTCAGAGCTCTCGACT 81 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || ||||| ||||| || ||||| | |||||| ||||| |||||||| || Sbjct 80 TCAAGAGTGATGGTCTTGCCGGTAAGAGTTTTGACGAAGATTTGCATCTT 31 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || || | || || || | || ||||| || ||||| |||||||| || Sbjct 944 CCACCTCTCAGACGGAGGACAAGATGCAAGGTAGATTCTTTCTGAATATTGTAGTCAGCA 885 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || ||||||||||| || ||||| |||| |||||||| || || || Sbjct 884 AGGGTTCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 825 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || ||| | ||||| || ||||| Sbjct 824 ATGCCTTCCTTGTCCTGTATCTTAGCCTTCACATTGTCGATGGTGTCCGAGCTCTCCACT 765 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||||||| ||||| |||| ||||| || || || ||||| Sbjct 764 TCCAAAGTAATGGTCTTACCTGTTAGGGTTTTGACAAAGATCTGCAT 718 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || || || |||||||||||||| |||||||| | | ||| | ||| ||| Sbjct 470 ACGAGATGCAGGGTTGATTCCTTTTGAATATTGTAGTCTGCCAGGGTTCGGCCGTCTTCG 411 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| |||| ||| ||||| || ||||| || ||||| || || || Sbjct 410 AGCTGCTTTCCGGCAAATATCAGACGTTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGG 351 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||| || ||| | || || || || || || | || || || ||| Sbjct 350 ATCTTGGCTTTTACATTGTCAATGGTATCCGAGCTCTCAACTTCCAACGTTATCGTCTTA 291 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||||| ||||| || ||||| Sbjct 290 CCAGTCAGGGTTTTGACGAAGATCTGCAT 262 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || ||||| | |||||||| || || |||||||| ||| || Sbjct 716 CCACCCCTCAGACGGAGGACCAGGTGCAAGGTGGATTCTTTCTGGATGTTGTAATCGGCA 657 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| || || ||||| || ||||||||||| || || || Sbjct 656 AGGGTTCTACCATCCTCGAGCTGCTTTCCGGCAAAGATTAAACGCTGCTGGTCAGGGGGA 597 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || || || ||||| || | || || || || || Sbjct 596 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATAGTATCCGAGCTCTCAACT 537 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || || || || || || | |||||||| ||||| ||||| Sbjct 536 TCCAAGGTGATCGTCTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 490 >seq19645 Length=690 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| || || || ||||| || ||||||||||| || Sbjct 574 CCACCACGGAGACGGAGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCA 515 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| || || ||||| |||| | |||||| || || || Sbjct 514 AGCGTGCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGA 455 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || ||| ||||| || | |||||||| ||||| Sbjct 454 ATCCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTATCGATCGTGTCGGAGCTCTCCACC 395 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| | || || ||||| || ||||| Sbjct 394 TCGAGGGTTATGGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCAT 348 >seq34320 Length=242 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 134526 TTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATC 134585 || || |||||||||||| | | ||| | || |||||||| ||||| || || ||| Sbjct 1 TTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 60 Query 134586 AAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCC 134645 | | |||||| || ||||| |||||||| || || || || || ||||| ||| Sbjct 61 AGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG 120 Query 134646 AATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAA 134705 | |||||||| || || |||||||| ||||| || ||||| | || || ||||| Sbjct 121 ATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAG 180 Query 134706 ATTTGCATTTTG 134717 || ||||| ||| Sbjct 181 ATCTGCATCTTG 192 >seq28136 Length=407 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 134501 CAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTC 134560 || ||| ||||| | || || || || ||||||||||| || | | ||| | || Sbjct 224 CAGCACAAGGTGCAAGGTTGACTCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCCATC 165 Query 134561 GTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTC 134620 || | ||| ||||| ||||| |||| ||| ||||| |||||||| || |||||||| || Sbjct 164 TTCCAACTGCTTGCCCGCAAATATCAGACGTTGCTGGTCGGGCGGGATCCCTTCTTTGTC 105 Query 134621 TTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGT 134680 || ||||| || || ||| | ||| ||| ||| || || | || ||||| Sbjct 104 CTGGATTTTGGCCTTCACATTGTCGATTGTATCGCTGCTTTCAACTTCTAAGGTTATGGT 45 Query 134681 TTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || | || || ||||| || ||||| ||| Sbjct 44 CTTGCCCGTCAGGGTCTTTACGAAGATCTGCATCTTG 8 >seq25614 Length=477 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| || || | ||| | || || || |||||||||||||| ||||| || ||| Sbjct 44 CCTCCTCTTAGACGAAGCACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAGCC 103 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | || | || || ||||| || || || || || | | |||||| || || || Sbjct 104 AAGGTCCTGCCA-TCCTCCAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGG 162 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || || || || ||||| ||| | ||||| || || || Sbjct 163 AATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGCTCTCAAC 222 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| || || || |||| ||||| || || |||||||| Sbjct 223 TTCCAATGTAATTGTCTTTCCAGTTAGTGTTTTTACAAAGATTTGCAT 270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505173883078280