Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_027204.1 Length=194701 Score E Sequences producing significant alignments: (Bits) Value seq776 82.4 1e-10 >seq776 Length=11329 Score = 82.4 bits (90), Expect = 1e-10 Identities = 164/243 (67%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 176357 CAGTGTCGGCAAAGCCAACGGTTCGCGTTCAAGCTGTTCCTTCACCTGATCGAAGTGATT 176416 ||| ||||| | || || || | ||| | ||||| || ||||| |||||| || Sbjct 10751 CAGCGTCGGGTAGGCGAAGGGCTGGCGCGCCAGCTGGGTCTCGACCTGGGTGAAGTGGTT 10692 Query 176417 GTTATAGATGTGGGTATCACCAAGGTTGCCGATCAGTTCCCCGACTTCCAAGCCGCATTC 176476 ||| ||||||||| || ||| | | | || | || || || | || | |||||| Sbjct 10691 GTTGTAGATGTGGCAGTCGCCACCGGTCCAGACGAAGTCGCCCACCTGCAGGTCGCATTG 10632 Query 176477 CAGCGCGATCAGATGTGTCAGGAGTGCGTAAGAGGCGATGTTGAATGGAAGCCCCAAGAA 176536 | | || | || || ||||| || ||||| |||||||||||| |||| |||| ||| Sbjct 10631 CTGGGCCAGCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAA 10572 Query 176537 GACGTCCACGGACCGCTGATTCCAAAGGCAGGACAGTTTCCCGTTGCGGACATAGAACTG 176596 || |||| || ||||| | ||||| || || |||| | || |||||||| Sbjct 10571 GATGTCCGCGCTGCGCTGGTATAGCTGGCAGCTGAGCTTGCCGTCGGCCACGTAGAACTG 10512 Query 176597 GAA 176599 ||| Sbjct 10511 GAA 10509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622638477708840