Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_027348.1 Length=73990 Score E Sequences producing significant alignments: (Bits) Value seq776 150 8e-32 seq10022 140 2e-28 seq6884 118 5e-22 seq10726 113 2e-20 seq32881 98.7 5e-16 >seq776 Length=11329 Score = 150 bits (166), Expect = 8e-32 Identities = 298/431 (69%), Gaps = 14/431 (3%) Strand=Plus/Plus Query 21388 TACTACCAGGGCGAGGGCAAGTCTGACCGCACTGGCACAGGCACCAAGTCCGTATTCGGT 21447 ||| | || |||| | |||| | ||||| || ||||| ||||| ||| ||||| Sbjct 10095 TACGAGCACGGCGTGTCCAAGACCGACCGTACCGGCACGGGCACGCGCAGCGTGTTCGGC 10154 Query 21448 GCCCAGATGGAATTCGATCTGCGTGAGGGCTTCCCCCTGCTC--CAG-AAGAAGAC-CAC 21503 ||||||| ||||| ||| || ||||| || ||| || || |||||| ||| Sbjct 10155 CACCAGATGCGCTTCGACCTGTCCGAAGGCTTTCCGCTGGTCACCACCAAGAAGGTGCAC 10214 Query 21504 CCCCTTCACCACGATCTTCACCGAGCTCTCGTGGATGATGCAGGGCCTGACCAATGTGAA 21563 | ||| | ||| || || || |||| | ||| ||| | ||||||| Sbjct 10215 C----TCAAGTCCATCATCCTGGAACTGCTGTGGTTCCTGCGCGGCGACAGCAATGTGCG 10270 Query 21564 CTGGCTACAGCAAAAGGGCTGCCACATCTGGGACGAATGGGCTGGTCCTGATGGCGGCCT 21623 |||||| ||| | |||||| |||||||||||||||||| | || |||| ||| Sbjct 10271 CTGGCTGCAGGAGCGCGGCTGCACCATCTGGGACGAATGGGCCCGCGAGGACGGCGACCT 10330 Query 21624 CGGCCCGATCTATGGTGCCCAGTGGCGCAGCAT-CCAAGGCCCCGATGGAAAGAACATCG 21682 |||||| ||||||| | || ||||||| | || | ||| || || |||||| Sbjct 10331 GGGCCCGGTCTATGGCGTGCAATGGCGCAACTGGCCGACGCCG-GACGGCGGCCACATCG 10389 Query 21683 ACCAGCTGGCC-AAG-GCACAAGAGCTGCTGCTGAACGACCCGGACAGCCGCCGCATCAT 21740 ||||| | ||| ||| | || ||| ||| || | |||||||||||||||||||||| Sbjct 10390 ACCAGATCGCCGAAGTGGTCA--AGCAGCTCAAGAGCAACCCGGACAGCCGCCGCATCAT 10447 Query 21741 CGTGAATGCCTGGAACGTGGCCGAGCTCGACCAGATGGCCCTGACACCGTGCCATGCGAT 21800 ||| | ||||||||||||||||| || |||||||| || | || ||||| || | Sbjct 10448 CGTCAGCGCCTGGAACGTGGCCGACCTGCCGCAGATGGCGCTCATGCCCTGCCACGCCTT 10507 Query 21801 GTTCCAGTTCT 21811 |||||||||| Sbjct 10508 CTTCCAGTTCT 10518 Score = 125 bits (138), Expect = 3e-24 Identities = 142/188 (76%), Gaps = 7/188 (4%) Strand=Plus/Plus Query 21949 CTGAGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATC 22008 || |||||| | || || ||||||||||| ||||| ||||||||||| |||||||||||| Sbjct 10536 CTCAGCTGCCAGCTATACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACATC 10595 Query 22009 GCCAGCTACGCGCTGCTGACGCACCTCATGG--CGGCCACGGTCGGCATGCAGGCCGAGA 22066 |||||||||||||||||||| ||| | ||| | || | | || | |||||| | Sbjct 10596 GCCAGCTACGCGCTGCTGACCCACATGCTGGCCCAGCAATG--CGACCTGCAGGTGGGCG 10653 Query 22067 AGTTCATCTGGTCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCAGGCCAAG- 22125 | ||| ||||| | || || ||||||||| | ||| |||||| | ||||| | || Sbjct 10654 ACTTCGTCTGGACCGGTGGCGACTGCCACATCTACAACAACCACTTCACCCAGGTCGAGA 10713 Query 22126 --CAGCTG 22131 |||||| Sbjct 10714 CCCAGCTG 10721 >seq10022 Length=1431 Score = 140 bits (154), Expect = 2e-28 Identities = 211/293 (72%), Gaps = 9/293 (3%) Strand=Plus/Minus Query 21563 ACTGGCTACAGCAAAAGGGCTGCCAC-ATCTGGGACGAATGGGCTGGTCCTGATGGCGGC 21621 ||||||| || || |||| | || ||||||||||||||||| | | || |||| | Sbjct 862 ACTGGCTGAAGGAACGGGGC-GTGACGATCTGGGACGAATGGGCGCGCGCGGACGGCGAC 804 Query 21622 CTCGGCCCGATCTATGGTGCCCAGTGGCGCAGCAT-CCAAGGCCCCGATGGAAAGAACAT 21680 || ||||| |||| || | |||||||||||| || | ||| ||||| |||| Sbjct 803 CTGGGCCCCGTCTACGGCGTGCAGTGGCGCAGCTGGCCCACGCCG-GATGGCGGCCACAT 745 Query 21681 CGACCAGCTGGCCAAGGCACAAGAGCTGCTGCTGAACGACCCGGACAGCCGCCGCATCAT 21740 ||||||| | | ||| || |||| ||| |||| ||| ||||||||||| Sbjct 744 CGACCAGATCAGCCAGGTGATCGACACGCTGAAGAAGAACCCCGACTCGCGCCGCATCAT 685 Query 21741 CGTGAATGCCTGGAACGTGGCCGAGCTCGACCAGATGGCCCTGACACCGTGCCATGCGAT 21800 ||| | ||||||||||||||||| || ||| |||||||||| | |||||||||||| | Sbjct 684 CGTCAGCGCCTGGAACGTGGCCGATCTGGACAAGATGGCCCTCATGCCGTGCCATGCGTT 625 Query 21801 GTTCCAGTTC----TGGACCCGCAAGCTGACGCTCACCGAGCGCATCAACCTG 21849 ||||||||| ||| ||||| || | ||| | ||||||| ||| ||| Sbjct 624 CTTCCAGTTCTACGTGGCCCCGC-CGCAGGCGCCCGGCGAGCGCGGCAAACTG 573 Score = 127 bits (140), Expect = 1e-24 Identities = 127/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 21949 CTGAGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATC 22008 ||||||||| | || || ||||||||||| ||||| |||||||||||||| ||||||||| Sbjct 575 CTGAGCTGCCAGCTGTACCAGCGCAGCGCCGACATCTTCCTGGGCGTGCCGTTCAACATC 516 Query 22009 GCCAGCTACGCGCTGCTGACGCACCTCATGGCGGCCACGGT-CGGCATGCAGGCCGAGAA 22067 ||||||||||| ||||| |||||| | |||| || || || || | || | | | | Sbjct 515 GCCAGCTACGCCCTGCTCACGCACATGGTGGC-GCAACAGTGCGACCTGGAAGTGGGCGA 457 Query 22068 GTTCATCTGGTCTGGCGGTGACTGCCACCTGTACTCGAACCA 22109 ||||||||| | ||||| || |||||| | ||| ||||| Sbjct 456 CTTCATCTGGACCGGCGGCGATTGCCACATCTACAGCAACCA 415 >seq6884 Length=2068 Score = 118 bits (130), Expect = 5e-22 Identities = 82/93 (88%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 21949 CTGAGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATC 22008 || |||||| | |||||||||||||||| ||||| ||||| |||||||| ||||||||| Sbjct 1596 CTCAGCTGCCAGCTCTATCAGCGCAGCGGCGACATCTTCCTCGGCGTGCCGTTCAACATC 1655 Query 22009 GCCAGCTACGCGCTGCTGACGCACCTCATGGCG 22041 |||||||||||||||||||||||| | ||||| Sbjct 1656 GCCAGCTACGCGCTGCTGACGCACATGGTGGCG 1688 Score = 113 bits (124), Expect = 2e-20 Identities = 314/470 (67%), Gaps = 24/470 (5%) Strand=Plus/Plus Query 21354 CATGAAGCCCTACATGGATCTGCTCCACCAGATCTACT--ACCAGGGCGAGGGCAAGTCT 21411 |||||||| ||| | |||||||| | ||| | | || | ||||||| | ||||| Sbjct 1121 CATGAAGCAATACCTCGATCTGCTGCGCCA--TGTGCTGGAGCAGGGCGCCGAGAAGTCG 1178 Query 21412 GACCGCACTGGCACAGGCACCAAGTCCGTATTCGGTGCCCAGATGGAATTCGATCTGCGT 21471 |||||||| ||||| ||||| ||| ||||| |||||| ||||| || Sbjct 1179 GACCGCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCGACCTCAAC 1238 Query 21472 GAGGGCTTCCCCCTGCTCCAGAAGAAGAC-CACCCCCTTCACCACGATCTTCACCGAGCT 21530 || |||||||| ||| || | |||| | | ||| | | ||||| || |||||| Sbjct 1239 GAAGGCTTCCCGCTGGTCACCACCAAGAAACTGCACCTGCGCT-CGATCATCCACGAGCT 1297 Query 21531 CTCGTGGATGATGCAGGGCCTGACCAATGTGAACTGGCTACAG--CAA-AAGGGCTGCCA 21587 |||| | || ||||| ||||| | || || || ||| |||| | || Sbjct 1298 GCTGTGGTTCCTGAAGGGCGAAACCAACATCGCCTACCTCAAGGACAACAAGGTCAGC-- 1355 Query 21588 CATCTGGGACGAATGGGCTGGTCCTGATGGCGGCCTCGGCCCGATCTATGGTGCCCAGTG 21647 ||||||||||| ||||||| | |||||| || || ||| | || || ||||| Sbjct 1356 -ATCTGGGACGAGTGGGCTGACGCGAATGGCGAACTGGGGCCGGTGTACGGCAAGCAGTG 1414 Query 21648 GCGCAGCATCCAAGGCCCCGATGGAAAGAACATCGACCAGCTG----GCCAAGGCACAAG 21703 |||||| ||||| ||| ||||||| |||||||||| || | | || | | Sbjct 1415 GCGCAGTTGGGAAGGCGTCGACGGAAAGACCATCGACCAGATGCAGTGGC-TGGTGGACG 1473 Query 21704 AGCTGCTGCTGAACGACCCGGACAGCCGCCGCATCATCGTGAATGCCTGGAACGTGGCCG 21763 || | || | |||||||| ||||| | | | | ||||||||||| |||| Sbjct 1474 AGATCAAGC---GCAACCCGGACTCGCGCCGGCTGGTGATCAGCGCCTGGAACGTCGCCG 1530 Query 21764 AGCT--CGACCAGATGGCCCTGACACCGTGCCATGCGATGTTCCAGTTCT 21811 |||| ||| ||||||| ||| ||||||||| || |||||||||||| Sbjct 1531 AGCTGCCGA--AGATGGCGTTGATGCCGTGCCATTCGCTGTTCCAGTTCT 1578 >seq10726 Length=1340 Score = 113 bits (124), Expect = 2e-20 Identities = 143/192 (74%), Gaps = 15/192 (8%) Strand=Plus/Plus Query 21949 CTGAGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATC 22008 || |||||| | ||||| |||||||||| ||||| ||||| |||||||| ||||||||| Sbjct 406 CTCAGCTGCCAGCTCTACCAGCGCAGCGGCGACATCTTCCTCGGCGTGCCGTTCAACATC 465 Query 22009 GCCAGCTACGCGCTGCTGACGCACCTCATGGC---GGCCACGG---TCGGCATGCAGGCC 22062 |||||||||||||||||||| ||| | |||| |||||| | | ||| || ||| Sbjct 466 GCCAGCTACGCGCTGCTGACCCACATGGTGGCGCAGGCCACCGGCCTGGGCGTG--GGCG 523 Query 22063 GAGAAGTTCATCTGGTCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCAGGC- 22121 || ||| | ||| |||||| |||||||| |||||||| | || ||||| Sbjct 524 ACTTCGTGCATACG--CTG--GGTGACGCGCACCTGTATTCGAACCATTTCGAGCAGGCC 579 Query 22122 --CAAGCAGCTG 22131 | |||||||| Sbjct 580 CGCGAGCAGCTG 591 >seq32881 Length=284 Score = 98.7 bits (108), Expect = 5e-16 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 21730 CGCCGCATCATCGTGAATGCCTGGAACGTGGCCGAGCTCGACCAGATGGCCCTGACACCG 21789 |||||||||||||||| ||||||||||||||||||||| || ||||||| || | || Sbjct 257 CGCCGCATCATCGTGAGCGCCTGGAACGTGGCCGAGCTCAACAAGATGGCGCTCATGCCC 198 Query 21790 TGCCATGCGATGTTCCAGTTCT 21811 ||||||||| | |||||||||| Sbjct 197 TGCCATGCGTTTTTCCAGTTCT 176 Score = 89.7 bits (98), Expect = 2e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 21955 TGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATCGCCAGC 22014 ||| | || || |||||||| || ||||| || ||||||||||| |||||||| || ||| Sbjct 131 TGCCAGCTGTACCAGCGCAGTGCGGACATCTTTCTGGGCGTGCCGTTCAACATTGCGAGC 72 Query 22015 TACGCGCTGCTGACGCACCTCATGGCG 22041 ||||| |||||||||||| | ||||| Sbjct 71 TACGCCCTGCTGACGCACATGGTGGCG 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236540702361029