Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_027368.1 Length=33828 Score E Sequences producing significant alignments: (Bits) Value seq1131 96.9 7e-16 >seq1131 Length=8710 Score = 96.9 bits (106), Expect = 7e-16 Identities = 287/432 (66%), Gaps = 22/432 (5%) Strand=Plus/Plus Query 15288 TCTTCGCGCAGCTCGTCGATGTCGAACAGGTCACAGCC-ACCCTTGGCGGCATCTTCAAT 15346 ||||| ||||||||||||||||||||||||| ||||| | | || || | || || || Sbjct 4528 TCTTCCCGCAGCTCGTCGATGTCGAACAGGTTGCAGCCCAGGCGTGCCG-CGTCCTCGAT 4586 Query 15347 CGTGACCACATAACGCCACTGCTTATCCGG---GCAAAGGCGACCGC-CATCGCGCAGTT 15402 ||| ||||| | ||||||| ||| | || | || |||| || ||| || Sbjct 4587 CGTCACCACGTCGCGCCACTTGCGATCGGCCCCGCGGATGCCGCCGCGCAGCGCTGCGTG 4646 Query 15403 CATCAAA-CGTTGGGAA----CTCGATGTTCTTGCGTCGTTCGCTGCCATCGCGCCATTT 15457 ||| || ||| | |||| || |||| | || | ||| || || | Sbjct 4647 GCTCACGTCGATGGTGATGGCCTCGCCCTTGCTGCGGCCTTTGTTGCGCTC-CG-----T 4700 Query 15458 GTCCCCAGTCCAGAACGGGTAAGCGGGGTGCATTTTGGTTGAAGGGGTGGAAAAGTACGT 15517 | || |||||||||| || || ||| ||| || |||||||| |||||||| Sbjct 4701 G---CCGTTCCAGAACGGATACGCCTCATGCGACATGGCCGACGGGGTGGAGAAGTACGT 4757 Query 15518 CTTGCGCCACTTCTTATGCGTGGCCATCGCTGAGGCGACTTTGTTCAGCTCGTCAAA-CT 15576 ||||||||| | ||| ||||| ||||| || | ||| || ||||| |||| | ||| | Sbjct 4758 CTTGCGCCAATGCTTGTGCGTCGCCATGGCCGCGGCCACCTTGTTGAGCTGGCGAAAGCC 4817 Query 15577 TGCCGATCCAGAAATACTCATCCACATACACATGGCCGTGGTAACTCTGCGCTGTTTTGC 15636 | | | ||| || ||||||| | || | | |||| | | |||||| || || Sbjct 4818 CGAC-ACCCAAAAGAACTCATCGAAGTAGAAGTCGCCGCTGCGCCCCTGCGCCGTCTTCG 4876 Query 15637 CATTGGTAGACAGGAAATGCAGCTCAGCGCCATTAGAAAGCGTCATCGGGTTGCCGGAAA 15696 ||||||| || || |||||||| || || || || ||| || |||| |||| | Sbjct 4877 CATTGGTGCCCAAAAAGTGCAGCTCCGCACCGTTCGACAGCACGATAGGGTCGCCGCTCA 4936 Query 15697 GTTCCAGCCCCA 15708 | |||| |||| Sbjct 4937 GCTCCACGCCCA 4948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108082367213220