Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_027381.1 Length=68365 Score E Sequences producing significant alignments: (Bits) Value seq1653 122 4e-23 seq799 82.4 3e-11 >seq1653 Length=6607 Score = 122 bits (134), Expect = 4e-23 Identities = 252/370 (68%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 8646 GCAACAGATGGTTCTGCTGGTATTGATTTACGAGCCAATACAGTT-ATGCCATTCGAACT 8704 ||||||| ||||| || ||| | |||||||| ||| | | | || ||| || | Sbjct 3010 GCAACAGCAGGTTCAGCGGGTTTAGATTTACGTGCCTGCGTCGATGAAGCAATT-GATAT 2952 Query 8705 TAAACCGGGAGAAACTACTCTGGTAAATACTGGTTTAGCTATCCATCTGGATGATGTTCA 8764 | |||| ||| ||||| | | || || || ||| | || || || | ||||||| | Sbjct 2951 TGAACCAGGACAAACTGTTTTAGTGAAAACAGGTATGGCAATTTATATTCATGATGTAAA 2892 Query 8765 CTATGCAGGTATGATTTTACCTCGTTCTGGGTTAGGGCATAAACATGGTATTGTGCTTGG 8824 | ||| ||| | |||||||| ||||| || ||||| |||||||| ||||| |||||||| Sbjct 2891 TTTTGCTGGTTTAATTTTACCGCGTTCAGGTTTAGGTCATAAACACGGTATCGTGCTTGG 2832 Query 8825 AAATCTTACAGGTCTCATTGATAGTGATTATCAAGGGGAACTGATGGTAAGCCTCTGGAA 8884 ||| | ||| | |||||| ||||||||||| ||| ||||||| | ||||| Sbjct 2831 TAATTTAGTTGGTTTGATTGATTCAGATTATCAAGGTGAATTGATGGTTTCAGTTTGGAA 2772 Query 8885 TCGCTCTACAAAGC-CTTTTACTATTAATCCAGGTGACCGTATTGCTCAGTTAGTTATTG 8943 || | |||| | | || | | | |||||||| || | || |||| ||| | | Sbjct 2771 CCG-TGGTCAAACCACATTCCGTCTAGAACCAGGTGAGCGCCTAGCACAGTACGTTTTAG 2713 Query 8944 TGCCTGTAATGCAGCCTGAATTTGTTATAGTAGACTCTTTTGAAGCTACTGAAAGAGGCG 9003 | || || | || ||||||||| |||||| ||||||| ||| | | |||| Sbjct 2712 TTCCAGTTGTTCAAGCTGAATTTGAGCAAGTAGAAGAATTTGAAGAAACTTTACGTGGCG 2653 Query 9004 AAGGTGGTTT 9013 ||||| || Sbjct 2652 CTGGTGGCTT 2643 >seq799 Length=11159 Score = 82.4 bits (90), Expect = 3e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 64673 CGGAATGTAGCACAGCCGGGTAGTGCATCTGCTTTGGGAGCAGAGGGTCATAGGTTCAAA 64732 |||| ||||| ||||| ||||| ||||||||||||||||||||||||| |||| || Sbjct 3565 CGGAGCGTAGCGCAGCCTGGTAGCGCATCTGCTTTGGGAGCAGAGGGTCGCGAGTTCGAA 3624 Query 64733 TCCTATCATTCCGACCAAATTATTC 64757 ||| | ||||||||||| |||| Sbjct 3625 TCCCGCCGCTCCGACCAAATGATTC 3649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 218548498729154