Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq23650 114 2e-20 seq10022 111 2e-19 seq3205 109 8e-19 seq10355 98.7 2e-15 seq6884 86.0 1e-11 seq776 84.2 3e-11 >seq23650 Length=538 Score = 114 bits (126), Expect = 2e-20 Identities = 198/285 (69%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 197613 TGAAACAATATCTTGAGATGATGCAGAACATTCTGGACGAGGGTCATGTTAAAGG-CGAT 197671 ||||||| |||||||| ||||||| || | || || ||||| || | |||| |||| Sbjct 315 TGAAACAGTATCTTGAACTGATGCAAAAAGTGCTCGATGAGGG-CACGCCAAAGAACGAT 257 Query 197672 CGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCGTAAA 197731 || || || || || ||| | || | ||||| | ||||||||| || | ||| || Sbjct 256 CGCACCGGCACCGGTACGATCTCCATTTTTGGCCACCAGATGCGCTTCAACCTGCAGGAA 197 Query 197732 GGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACTGCTG 197791 || || ||| | |||||||| ||| ||| | || || || || ||||||||||| Sbjct 196 GGCTTTCCGCTGGTCACGACCAAGCGCTGCCATTTACGCTCGATCATTCATGAACTGCTC 137 Query 197792 TGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCATTTGG 197851 |||||||| || || ||||||| | |||||| || || ||| |||||||| Sbjct 136 TGGTTCCTGCAGGGCGACACCAACATCGCTTATCTGCGCGAGAATAACGTCTCCATTTGG 77 Query 197852 CGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGGT 197896 || ||| |||||||| || | || ||||| | |||||| Sbjct 76 GACGAATGGGCGGATGAAAACGGCGATCTGGGCCCAGTTTATGGT 32 >seq10022 Length=1431 Score = 111 bits (122), Expect = 2e-19 Identities = 183/264 (69%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 198335 TGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATCGCGTCT 198394 || ||||| || || ||||| || || | ||||| |||||||||||||||||||| Sbjct 569 TGCCAGCTGTACCAGCGCAGCGCCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCAGC 510 Query 198395 TACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGATTTCATT 198454 ||||| | ||| ||||||||| || || ||| || ||| |||||| ||||| Sbjct 509 TACGCCCTGCTCACGCACATGGTGGCGCAACAGTGCGACCTGGAAGTGGGCGACTTCATC 450 Query 198455 TGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAGCTCCAGCTG 198514 ||||| ||||| || || ||||| || ||| ||||||| ||| |||||| Sbjct 449 TGGACCGGCGGCGATTGCCACATCTACAGCAACCATGCCGAGCAGGTGGCGCTGCAGCTG 390 Query 198515 ACGCGTGAGCCGTTACCTTTACCGAAACTGATCATCAAGCGTAAACCGGAATCTATCTTC 198574 |||| | |||||| | | || | ||| |||| ||| || || | || |||||| Sbjct 389 TCGCGCGCGCCGTTCGCGTACCCCACGCTGCGCATCCTGCGCAAGCCCGCTTCCATCTTC 330 Query 198575 GATTATAAATTCGAAGATTTTGAG 198598 || || | ||||| || || ||| Sbjct 329 GACTACCAGTTCGAGGACTTCGAG 306 >seq3205 Length=3996 Score = 109 bits (120), Expect = 8e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 197663 AAAGGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGAT 197722 |||||||| ||||| || ||||| || | |||||| ||||| | || |||||||||||| Sbjct 2814 AAAGGCGACCGTACAGGCACAGGAACCCGTTCTGTATTTGGTCATCAAATGCGTTTTGAT 2755 Query 197723 TTGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCAT 197782 | ||||||||| || ||| |||| || || ||| | ||| | ||||||||| | | Sbjct 2754 CTCTCTAAAGGTTTTCCTTTACTCACCACAAAAAAAGTTCACTTCCGTTCTATTGTGATT 2695 Query 197783 GAACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAA 197835 || | || ||||| | | || || |||||| | ||||||| ||||||| Sbjct 2694 GAGTTACTTTGGTTTTTAAAAGGCGACACCAACGTCCAATATCTAAAAGATAA 2642 >seq10355 Length=1388 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 197666 GGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTG 197725 |||||||| || || || || |||| |||||||| || |||||||||||| ||| | Sbjct 1242 GGCGATCGCACCGGTACGGGCACGCGCTCTGTCTTCGGCTACCAGATGCGTTTCGATCTT 1301 Query 197726 CGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAA 197785 |||| |||||| | | || || ||||| || || ||||| || || |||||||| Sbjct 1302 TCAGAAGGCTTCCCGGTGCTGACCACCAAGAAGCTTCATCTGCGCTCCATCATCCATGAG 1361 Query 197786 CTGCTGTGGTTCCTTAGTGGGGATACC 197812 |||||||||||||| | || || ||| Sbjct 1362 CTGCTGTGGTTCCTGAAGGGCGACACC 1388 >seq6884 Length=2068 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 197730 AAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAACTGC 197789 |||| |||||| | ||||| || |||||||| |||||||| || || ||||| || |||| Sbjct 1240 AAGGCTTCCCGCTGGTCACCACCAAGAAACTGCACCTGCGCTCGATCATCCACGAGCTGC 1299 Query 197790 TGTGGTTCCTTAGTGGGGATACCAACA 197816 |||||||||| | || || ||||||| Sbjct 1300 TGTGGTTCCTGAAGGGCGAAACCAACA 1326 >seq776 Length=11329 Score = 84.2 bits (92), Expect = 3e-11 Identities = 186/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 198335 TGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATCGCGTCT 198394 || ||||| || || ||||| ||||| | ||||| ||||| || ||||||||||| Sbjct 10542 TGCCAGCTATACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAGC 10601 Query 198395 TACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGATTTCATT 198454 ||||| | || |||||| | |||||||| || || | |||||| ||| | Sbjct 10602 TACGCGCTGCTGACCCACATGCTGGCCCAGCAATGCGACCTGCAGGTGGGCGACTTCGTC 10661 Query 198455 TGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAGCTCCAGCTG 198514 ||||| || || ||| || ||||| || || | |||| | || ||||||| Sbjct 10662 TGGACCGGTGGCGACTGCCACATCTACAACAACCACTTCACCCAGGTCGAGACCCAGCTG 10721 Query 198515 ACGCGTGAGCCGTTACCTTTACCGAAACTGATCATCAAGCGTAAACCGGAATCTATCTTC 198574 |||| |||| || | | |||| ||| |||||||| || || || |||||| Sbjct 10722 GCGCGCCAGCCCTTCGCCTACCCGACGCTGCAGATCAAGCGCCGGCCCGACTCCATCTTC 10781 Query 198575 GATTATAAATTCGAAGATTTTGAGATCGTTGGGTATCAG 198613 | || | | ||| || || ||| |||| || || ||| Sbjct 10782 GGCTACGAGTACGAGGACTTCGAGGTCGTCGGCTACCAG 10820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 768851895358120