Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1997 197 1e-45 seq195 118 8e-22 seq1969 93.3 3e-14 >seq1997 Length=5797 Score = 197 bits (218), Expect = 1e-45 Identities = 548/826 (66%), Gaps = 32/826 (4%) Strand=Plus/Minus Query 43763 TTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAA-- 43820 |||||||| || |||||| |||||||| | || ||| || | |||| || ||| Sbjct 2636 TTTTGGACTGCCGAAGAAATTGATTTGCACCAGGATTTATCAGACTGGAA--CAATAAGC 2579 Query 43821 --AACCACAA-GAAAAACATTTTAT--ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGA 43875 || | | || ||| ||||||| | | | |||| || ||||||||||| || Sbjct 2578 TGAATAATGATGAGAAATATTTTATCAAACATA--TTTTAGCTTTTTTTGCTGCATCAGA 2521 Query 43876 CGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGC 43935 ||| || || |||||||| ||| |||| | |||||||||| || ||||| Sbjct 2520 CGGTATTGTGAATGAAAACCTGGCAGAGAATTTTGTAAACGAAGTTCAATATCCGGAAGC 2461 Query 43936 ACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCT 43995 || ||| || || || ||||| || || ||||| || |||| || ||| Sbjct 2460 TAAATTTTTCTACGGATTCCAAATCATGATGGAGAATATCCACAGCGAAACCTATTCTCT 2401 Query 43996 TCTGATAGATACGTACATCAAAGATGG-GCACGAGAAGCATCGATTGTTTAATGCGATAG 44054 |||||| |||||||| | ||||||| ||| || ||| | | | || | || | | Sbjct 2400 TCTGATTGATACGTATGTAAAAGATGAAGCA-GAAAAGGACCAGCTTTTCCACGCTTTGG 2342 Query 44055 AAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATG 44114 || | | || || ||||| | ||||| |||||||| | |||||||| | || | Sbjct 2341 AAGTATTTCCGGCAATTAAGAAAAAAGCGGACTGGGCTTTAAAATGGATTGAATCC---G 2285 Query 44115 ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174 |||| |||| ||| |||| | || ||||||| || ||||| || || || |||||| Sbjct 2284 ATTCATTTGCTGAAAGACTGATTGCTTTTGCAGCCGTAGAAGGAATCTTTTTCTCAGGAG 2225 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 | || | || | |||||| || ||||| || |||||||| || | || ||||||| Sbjct 2224 CATTCTGTTCTATCTATTGGTTGAAAAAACGTGGATTGATGCCGGGTCTTACTTTTTCAA 2165 Query 44235 ATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC-TTGCTTGTTACTTGGA 44293 |||| || || |||||||||||| ||||||| |||||||| ||| | ||| | Sbjct 2164 ATGAATTGATTTCACGTGATGAAGGCGTACATTGTGATTTTGCAGTGC-----ATTTGCA 2110 Query 44294 TATCTAGGA----GACGATAAGCCTTCATGTAAG--ACAATTACAGATATTGTTGTAGAG 44347 | | | | | |||| |||| ||| | ||||||||| || | ||| || Sbjct 2109 CAACCACCACCTCGTTAATAAAGTTTCA--AAAGCCAGAATTACAGAAATCCTGGTACAG 2052 Query 44348 GCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATG 44407 || | | || ||| ||||||||| ||| | | | || || | ||||| |||||| Sbjct 2051 GCTCTTGATATTGAAAGAGAATTTATAACAGAATCTCTTCCGGTGAGCTTAATTGGAATG 1992 Query 44408 AATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTG 44467 || | | || |||| ||||| | |||| | | || | ||| | | ||| | Sbjct 1991 AACGCAAACTTAATGACACAATACTTAGAATTTGTAACCGACAGATTATTAGTAGAATTA 1932 Query 44468 GGTTGCGATAAACACTAT-ATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTT 44526 || || | | | ||| | | | | || ||||||||||||||||| | || || || Sbjct 1931 GGATGTGCAAGAGTGTATAACTCTGC-GAATCCGTTTGATTTTATGGATATGATCTCTTT 1873 Query 44527 GGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 | || |||||||| || || |||||| | ||| |||||||||| Sbjct 1872 ACAGGGTAAAACAAATTTCTTCGAAAAAAGAGTTTCAGAATATCAG 1827 >seq195 Length=24554 Score = 118 bits (130), Expect = 8e-22 Identities = 390/597 (65%), Gaps = 27/597 (5%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| | || || ||||| | |||| | ||||| |||||||| ||||| |||| Sbjct 22708 TTTGTACTCTTCCCGATTCAGGAGAATGATGTCTGGCAGATGTACAAGAAAGCTGAGGCC 22767 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || |||||||| || || || | ||| || | ||| | | |||||| | Sbjct 22768 TCGTTTTGGACGGCTGAGGAGCTGGATCTGGTGCACGACATTAAAGATTGGA-------A 22820 Query 43820 AAACCACAAGAAAAAC-------ATTTTAT--ATCTTTGGTTTTGGCGTTTTTTGCTGCG 43870 ||||| || | ||| | ||||| | | | || | || || ||||| || Sbjct 22821 AAACCTCACTGACAACGAGCGTCACTTTATCAAGCAT--GTGCTCGCCTTCTTTGCAGCC 22878 Query 43871 AGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA-GAAGTTCAATTACC 43929 || || || || || |||||||| ||| | | || |||| ||||| || | || Sbjct 22879 AGTGATGGCATTGTGAATGAAAACCTGGCCA-TGAACTTCAGCAACGAAGTGCAGGTTCC 22937 Query 43930 AGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTA 43989 ||||| || ||||| || || ||||| ||||| || || || ||||| ||||| | || Sbjct 22938 CGAAGCTCGGTGTTTCTACGGTTTTCAGATTGCTATCGAGAACATTCACTCGGAGGTCTA 22997 Query 43990 CAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGC 44049 || || || || ||||||||||| || | |||||| | | ||| | ||| Sbjct 22998 TTCGCTACTCATTGACACGTACATCAAGGACGCTGTAGAGAAGGACCTTTTGCTGCGTGC 23057 Query 44050 GATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATT 44108 || || || | || || | | || | ||||| | ||||| || || ||| | Sbjct 23058 CATTGACACTATCCCGTGTG-TGAAGAAGAAAGCCGCTTGGGCACTCAAGTGGTGTGACC 23116 Query 44109 CAAATGATTCTTTT---GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCT 44165 | || || | | ||| || ||| | ||||| || ||||| || || |||| Sbjct 23117 CGCGTGTGTCGTCATACGCAGAGCGTCTTCTTGCGTTCGCCTCAGTGGAGGGTATCTTCT 23176 Query 44166 TTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTG 44224 | || || || || ||| |||| || ||| | |||||||| ||| | |||||||| | Sbjct 23177 TCTCTGGCTCCTTCTGCT-CCATCTTCTGGCTGAAGAAACGTGGTCTCATGCCTGGTCTC 23235 Query 44225 ACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 | ||||| |||||| | || ||||||||||| || | ||| ||| ||||| ||| Sbjct 23236 AGCTTTTCGAATGAGCTTATCAGTCGTGATGAGGGTATGCATACCGACTTTGCCTGC 23292 >seq1969 Length=5862 Score = 93.3 bits (102), Expect = 3e-14 Identities = 189/276 (68%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA-ATGGTGAACTGTC 41107 ||||| | ||||| || || |||| |||||||| ||||| ||| ||||||| ||||| Sbjct 2376 ATGGCGCTACCACCGTGCCACATGTTCTGTCAGTTCTACGTA-GCAGATGGTGAGCTGTC 2318 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 || || |||| || | |||| ||||||||||| || || || |||||||| || || Sbjct 2317 GTGCCAGATGTACCAGCGGTCAGCCGACATGGGACTTGGCGTGCCATTTAACATTGCCAG 2258 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGT 41227 || || || || ||| | || | || || || ||||||| || | ||| | Sbjct 2257 CTACGCGCTTCTGACGCGTTTGGTAGCGCAAGTGGTAGGGCTAAAACCAGGCAAGTTTAT 2198 Query 41228 TCACACGT--TAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAA 41285 ||| || | || |||| ||| | || | || ||| | ||||| | | |||| Sbjct 2197 --ACATGTAATTGGTGATGCACACGTGTATTTGAACCACGTGGAGCCACTTTTACAACAG 2140 Query 41286 CTGACACGAAAACCTAGACCATTTCCAACGCTACTT 41321 ||||| || | ||| | |||||||| || || ||| Sbjct 2139 CTGACGCGTACACCGCGTCCATTTCCGACACTTCTT 2104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397283849261695