Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq14623 95.1 1e-14 seq451 95.1 1e-14 seq20474 89.7 4e-13 seq7414 89.7 4e-13 seq28136 82.4 6e-11 >seq14623 Length=969 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||||||||||||||| || | | || ||||||||||||| || ||| Sbjct 458 GTTGATTCCTTTTGAATATTGTAGTCTGCCAGGGTTCGGCCGTCTTCGAGCTGCTTTCCG 399 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || ||||| || || || ||||| | || || || || ||||||| ||| Sbjct 398 GCAAATATCAGACGTTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTT 339 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | || || | | |||||||| | ||||| | || || ||||| ||| Sbjct 338 ACATTGTCAATGGTATCCGAGCTCTCAACTTCCAACGTTATCGTCTTACCAGTCAGGGTT 279 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 278 TTGACGAAGATCTGCAT 262 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| | ||| || || || || |||||||| ||| | | | || | ||||| ||||| Sbjct 237 ATGCAGCGTGGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCATCTTCCAGCTG 178 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 || || || | || ||||||||||| ||||| || | || || ||||| ||| || Sbjct 177 CTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGAATGCCTTCCTTATCCTGGATTTT 118 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 || | | || | ||||| | | || ||||| ||||| || | ||||| || Sbjct 117 TGCCTTTACATTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATGGTCTTGCCGGT 58 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| || ||||||||||| Sbjct 57 AAGAGTTTTGACGAAGATTTGCAT 34 >seq451 Length=16219 Score = 95.1 bits (104), Expect = 1e-14 Identities = 292/448 (65%), Gaps = 8/448 (2%) Strand=Plus/Plus Query 131644 TTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTT 131703 ||| ||||| ||||| |||| ||| | | ||||| ||||| |||| || | ||| Sbjct 8818 TTCCACTCGTTTCATGAACAGATCAGATATCCATAGAGCGTAAAACAAGTCACGCGCTCG 8877 Query 131704 TTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCA 131763 | | ||| | || | ||||| | || | || || || | ||| |||||||| Sbjct 8878 GTGCAGTTCACTGCCGTGATTTTTTCGGAGATCGAGGAACTCAAACACGTCTGCATGCCA 8937 Query 131764 GGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTACCGCC---TTGATTAACATGACG 131820 |||||||| || | ||| | | |||||||| ||||| || ||| | |||| || Sbjct 8938 TGGTTCCAAGTAGATTGCAAAGGAACCTTTGCGTTTACCTCCACCTTGGTCCACATACCG 8997 Query 131821 AACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCT 131880 | || ||| ||| | |||||||||||||| | |||||||| || || || | Sbjct 8998 AGCCGTGTCGTTAAACACGCGCAACATGGGGATGATACCGTTGGAAGACCCGTTAGTACC 9057 Query 131881 CTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTA 131940 ||||||||| | |||| ||| ||||| | | ||| ||||||||||| | | Sbjct 9058 ACGGATGTAGCTGTTCGTAGCTCGGATATTGTGCATGCTGATCCCAATACCTCCCGCCCA 9117 Query 131941 TTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGC 132000 || ||||| || |||| | | || | |||||| ||||| | || | Sbjct 9118 CTTTGAGATACAAGCACATTGCTTCAATGTATCATAGATTCCTTCAATTGAATCATCTTG 9177 Query 132001 AATGTCGACTAAAAAGCAAGAGGACAACTGTTG--GTGAAATGTGCCGGCTGAAAACAAT 132058 ||| | | |||||| || || || || || | ||| | ||||| || |||||| Sbjct 9178 CATGGCAAGTAAAAAACACGAAGATAATTGCGGCCGTGGA--GTGCCAGCATTAAACAAC 9235 Query 132059 GTGGGGCTGGCGTGTGTAAA-AAGTTTT 132085 ||||| | || || ||||| || |||| Sbjct 9236 GTGGGCGTCGCATGGGTAAAGAACTTTT 9263 >seq20474 Length=655 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | |||||| | |||| || | ||| || || || || ||||||||||| | Sbjct 326 CCACCCCTCAACCGGAGGACCAGGTGGAGCGTGGACTCCTTCTGGATATTGTAGTCAGCC 385 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | ||||| ||||| ||||| ||| | ||||| | ||| || ||||| || Sbjct 386 AAGGTGCGGCCATCTTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 445 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| || | | || | ||||| | | || || Sbjct 446 ATTCCCTCCTTGTCCTGGATCTTGGACTTTACATTATCGATTGTGTCGGAGCTCTCGACC 505 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || || || || || ||||||||||| Sbjct 506 TCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAGATTTGCAT 552 >seq7414 Length=1926 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 27024 CCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATG 27083 ||||||| || | || | || | ||| || || || ||||| ||||||||||||| Sbjct 1 CCGCGCAGACGAAGCACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAAC 60 Query 27084 TTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACA 27143 |||| | || || ||||| || |||||| |||| | |||||| || || || || | Sbjct 61 GTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATG 120 Query 27144 CCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCT 27203 || || || || ||||| | |||| | | || | | ||| | | || || || Sbjct 121 CCTTCCTTGTCCTGAATCTTCGTCTTCACGTTGTCGATCGAGTCCGACGACTCGACGTCA 180 Query 27204 AGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || | |||||||||| || ||||| || || ||||| Sbjct 181 AGAGTGATCGTCTTGCCCGTCAACGTCTTCACGAAAATCTGCAT 224 >seq28136 Length=407 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27045 TGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGT 27104 || || || || ||||| ||||| ||||| || || |||| | ||||| | ||| Sbjct 214 TGCAAGGTTGACTCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCCATCTTCCAACTGC 155 Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 || || || | || ||||| || || || ||||| | || ||||| || ||| ||| Sbjct 154 TTGCCCGCAAATATCAGACGTTGCTGGTCGGGCGGGATCCCTTCTTTGTCCTGGATTTTG 95 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 |||| | || | || || || ||||||||||| ||||| | ||||||||| Sbjct 94 GCCTTCACATTGTCGATTGTATCGCTGCTTTCAACTTCTAAGGTTATGGTCTTGCCCGTC 35 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||| ||||| Sbjct 34 AGGGTCTTTACGAAGATCTGCAT 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424750347499368