Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq14053 134 1e-26 seq5126 95.1 1e-14 >seq14053 Length=1015 Score = 134 bits (148), Expect = 1e-26 Identities = 193/267 (72%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 58077 GCACGCTACAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAA 58136 ||||| | |||||||| || | ||||| || ||||| ||||| ||||||| | | Sbjct 744 GCACGATCCAGCTGATCAAGTCGCTGGGCTGCAAGGCGGGCCTGGTGCTCAACCCCGGCA 803 Query 58137 CGCCGCTC-AGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCC 58195 ||||| || || | || || | || || | ||||| || | ||||||||||| Sbjct 804 CGCCGGTCGAGGTG-CTGGACTGGGTGCTGCCGGAGCTGGACCTGGTGCTGCTGATGTCG 862 Query 58196 GTGAACCCAGGCTTCGGCGGCCAGTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAA 58255 |||||||| ||||||||||| ||| | || || ||| | ||||||| || ||||||| Sbjct 863 GTGAACCCCGGCTTCGGCGGGCAGGCCTTCATCCCGTCGGCGCTGGACAAGCTGCGCGCG 922 Query 58256 GTGCGTCGCC-GCATTGATGCGTCCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGT 58314 ||||| |||| || || | |||| ||||| |||||||| | ||||| || || Sbjct 923 GTGCG-CGCCATGATCGACAAGACCGGCAGGGACATCCGCCTGGAGATCGACGGTGGGGT 981 Query 58315 GAAGGTGAACAATATCGGCGAGATCGC 58341 ||||| |||| |||||||||||||| Sbjct 982 GAAGGCCGACAACATCGGCGAGATCGC 1008 >seq5126 Length=2683 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 58200 ACCCAGGCTTCGGCGGCCAGTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGC 58259 |||| ||||||||||||||| | || || || | ||||||| || ||||||| |||| Sbjct 1 ACCCGGGCTTCGGCGGCCAGGCCTTCATCCCCTCGGCGCTGGACAAGCTGCGCGTGGTGC 60 Query 58260 GTCGCCGCATTGATGCGTCCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTGAAGG 58319 | || ||||| ||| | ||||| |||||||| | || ||||||||||||| Sbjct 61 GCAAGATGATCGATGCCAGCGGCAAGGACATCCGCCTGGAGATCGATGGCGGCGTGAAGG 120 Query 58320 TGAACAATATCGGCGAGATCGC 58341 |||| |||||||||||||| Sbjct 121 CCGACAACATCGGCGAGATCGC 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471032256809720