Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq23830 100 8e-17 seq7410 98.7 3e-16 seq258 95.1 3e-15 seq6074 82.4 2e-11 >seq23830 Length=533 Score = 100 bits (110), Expect = 8e-17 Identities = 195/288 (68%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 41172 AACAAAGTAGAAATCATTGGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGC 41231 |||||||| ||| | |||||| | || ||| || || || || | | || ||| Sbjct 194 AACAAAGTCATCATCGTCGGCAACCTCGGGCGCGACCCCGAGATGCGCACCTTCCCCAGC 253 Query 41232 GGCGGCGCGGTTGCTAATCTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACC 41291 |||| | ||| || || | | ||||||||| || || ||||| || || | |||| Sbjct 254 GGCGACCAGGTCGCCAACGTCACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACC 313 Query 41292 GGCGAGAAGAAAGAACAAACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAA 41351 |||||||| || ||| || || ||||||||| | || || ||| ||||| || Sbjct 314 GGCGAGAACAAGGAAGCCACCGAGTGGCACCGCATCGTGTTCAACGGCCGTCTGGCCGAG 373 Query 41352 ATTGCTAGCGAATACCTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACG 41411 || | || | ||||||||||| || | |||| | | |||||||||||||| || Sbjct 374 ATCGTGGGCCAGTACCTGCGCAAGGGCTCCCAGGTCTATGTGGAAGGCAGCCTGCGCACC 433 Query 41412 CGTAAATGGCAGGACCAGGCTGGCGTTGATCGCTACACCACTGAAATC 41459 || || ||| |||||| | ||| || | |||||| |||||| Sbjct 434 CGCAAGTGGACCGACCAGTCCGGCCAGGAAAAATTCACCACGGAAATC 481 >seq7410 Length=1926 Score = 98.7 bits (108), Expect = 3e-16 Identities = 193/280 (69%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 15891 ACCACCACAACCCCTGGCGTTGGGCTGACAGGCTGCA-CGTCCTTCACGTCAGGGTCAGC 15949 |||||||| ||| |||| ||||||| ||| ||| ||||| ||| | ||| || Sbjct 722 ACCACCACGCGCCCGGGCGATGGGCTGGT-GGCCGCAGCGTCCAGCACCTGGCCGTCGGC 664 Query 15950 -GCCAAGCGCGTGGAACACGTAACTGCCTTCGGAACCTGCTGTGGTGTATGCTTCCGGTG 16008 | | | ||||| |||||||| ||| | | || || | |||| | ||| | Sbjct 663 CGTCTTG-GCGTGAAACACGTAGGCGCCCACCGGGCCGGCCACGCTGTAGCCGCGCGGCG 605 Query 16009 ATAACTGGATGCGCGCGCGGAAATCATCGTCAGATTCCATGACGGCGGCCACTGGCGGCA 16068 | |||||||||| ||||||| | || |||| |||||| || ||| || ||||||| Sbjct 604 CGAGCTGGATGCGCTCGCGGAAGGCGTCATCAGCTTCCATCACCTGGGCGACGGGCGGCA 545 Query 16069 CTGCGTCAGGGTCAGCCGGTGTGATGGTCTGCCGTTCCACGTTGACGTTTGCGCCAAGCT 16128 | |||| |||| || || |||| | |||| | ||| || | ||||| |||| Sbjct 544 CGGCGTTGGGGTTGGCGGGCGTGACCACCAGCCGCTGCACCCCGAAGAACGCGCCGAGCT 485 Query 16129 GGTCCAGGTCGGAACCGGTGGCGTAGGCCAGCATGATGGC 16168 |||| ||||| | ||| ||||||||||||||||| ||| Sbjct 484 GGTCAAGGTCTGCCCCGCGGGCGTAGGCCAGCATGACGGC 445 >seq258 Length=21191 Score = 95.1 bits (104), Expect = 3e-15 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 27245 CGGTGAACAGGCCACCGCCAACCAGCACGTCATAGCCGTGGTCATTGGTGCGCTGTCTGC 27304 ||||||||||||| ||||| ||||| ||||| || |||| || || ||| |||| | | Sbjct 4020 CGGTGAACAGGCCCCCGCCCACCAGGACGTCGTATCCGTTGTGTTTCGTGGGCTGGCGCC 4079 Query 27305 CGTTGTCCGTTCCTTCGCTATAGGCGATCATATCCAGGAACGCGCAAACGTTCTTACCAC 27364 ||||||| || |||||| |||| | ||| |||| |||||| ||||||| ||| | Sbjct 4080 CGTTGTCGGTCCCTTCGGACCAGGCCAGCATGTCCAAGAACGCCACGACGTTCTCACCGC 4139 Query 27365 CTGCCTGTTGTG 27376 | |||| |||| Sbjct 4140 CGGCCTCCTGTG 4151 >seq6074 Length=2299 Score = 82.4 bits (90), Expect = 2e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 41310 ACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTG 41369 || |||||||||||||| || ||||||| ||||| | || || || |||| |||||| Sbjct 2049 ACCGAATGGCACCGCGTGGTGTTCTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTG 2108 Query 41370 CGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCG 41407 ||||| || ||| ||| | | | |||||||||||||| Sbjct 2109 CGCAAGGGCAGCTCGGTCTACGTCGAAGGCAGCCTGCG 2146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133153382135304