Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq451 185 1e-41 seq195 149 8e-31 seq9529 140 4e-28 seq35289 98.7 1e-15 seq1997 98.7 1e-15 >seq451 Length=16219 Score = 185 bits (204), Expect = 1e-41 Identities = 1187/1872 (63%), Gaps = 70/1872 (4%) Strand=Plus/Plus Query 110331 TGAACTGAATTG-GTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGT 110389 |||||||||| | ||||| ||| | | | || | ||||||||| || |||||||| Sbjct 7596 TGAACTGAATGGCGTCGGCTTTTGGGCGTCCG-CGCATATAGTACATGCCCGTCTTGAGG 7654 Query 110390 CCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATG 110449 || | ||||||||| || | ||||||||| | ||| || ||||| ||| | ||| Sbjct 7655 CCCTTTTTCCATGCATAGAAATGCATAGATGTGAGTTTACTGATCGTCGGATCGGCAATG 7714 Query 110450 AAGAGGTTCATACTTTGACTTTGGTCAATG-AAGCGCCCCCGTTGTGCCGCCATATCAAT 110508 | || | |||||| ||| |||| ||||||| | | | |||| ||| || | Sbjct 7715 TGAATATTGAGCGATTGACTCTGGCAAATGTAAGCGCCAC-GATCAGCCGACATGTCCAA 7773 Query 110509 GACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGAT 110568 ||| ||| ||| |||||||| || || || | |||||||| ||||| || Sbjct 7774 GACCGACTTTTGCTTGATTTCCCACACGGTCTTGTACTTTTCCTTGATATGGTCTGGAAT 7833 Query 110569 A-TCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGG 110627 ||| || || || | || || || | |||| || ||| | || | Sbjct 7834 GGTCTT-GACCTTTTGCACCGATCCACCGTCGTTCAAGATTTGATTACGGACTTCAGGCG 7892 Query 110628 ACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCAC 110687 ||||| || | | | || || || | || ||||||||||| || |||||||| Sbjct 7893 TCCAGATGCCCAAATCAATCAGCTCCTTCATCAGATGCTTGTTGACGATCGTAAACTCAC 7952 Query 110688 CTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTAC 110747 | ||||| | | ||| ||||||| |||||| || || | | ||||||| || | Sbjct 7953 CAGCGAGTACGCGACGATTGTACATGTTTGATGTGTACGGCTCGATGGATTCATTGTTGC 8012 Query 110748 CCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAG 110805 ||| ||| || || || || || |||||||| || |||| | ||||| |||||||| Sbjct 8013 CCAGGATCTGGGCAGTTGAAGCAGTTGGCATAGGAGCCACTAGCAAAGA--GTTACGAAT 8070 Query 110806 ACCCTTCTCCTTGATG-CGTTC--CTTGAGAACATCCCAGTCGTA--GTTGAG----CTT 110856 ||| | || |||| | ||| ||| | | |||||| | | || | Sbjct 8071 ACCGTGCT---TGATCACATTCTCCTTCAAGGCGGTCCAGTCCCAAAGACCAGACGACGG 8127 Query 110857 GGTTTCACCTTCCCACATGTCAAACTG-AAGCACCCCTTGGGACGCGGGAGAACCCTCAA 110915 || |||| |||||||||||| || ||| ||||||| || || || |||| | Sbjct 8128 AGTGACACC---CCACATGTCAAATTGGAAGATCCCCTTGCTG-GCAGGGGAGCCCTGGA 8183 Query 110916 AGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGA 110974 | || || || | ||| | | | || | || | || | ||||| || |||| Sbjct 8184 ACGTCTCGTACGGACCCAGTTCCTTGGCAATCTCCATAGAA-GTCTCCATCGAAGCGTAG 8242 Query 110975 TACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAG 111034 || ||||| |||||||| |||| || || || || ||||| || || Sbjct 8243 TAGATGGTCTCAAAGATGTTCTTGTTCAGTTCACGAGCCTCTTCACTTTCAAACGCAAAG 8302 Query 111035 CGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGC 111094 | || ||| |||| || |||||||||||||| | || | || | || ||| Sbjct 8303 TTCATGAGAAGAAAAGCATCGGCCAGACCTTGAACACCAATTCCCACGGGACGATGGCGC 8362 Query 111095 ATATTAGACTTTCGCGCAGTCT-CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAG 111153 || || || ||||| || ||| |||| || || | || |||||||||| ||| || Sbjct 8363 ATGTTGGATTTTCGAGCT-TCTGCAACCGGGTAGTAGTTGACGTCAATGACTTTGTTGAG 8421 Query 111154 ATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA-AGTGCGAGTCT 111212 || ||| || | ||| || | || | || || || | || | || | Sbjct 8422 GTTGCGGGTGACGACCTTGGTCACGTCGTACAGCAATTTGTAGTTGAACACACCG----T 8477 Query 111213 CTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCT 111272 |||| ||| |||| || || || | ||| ||||| ||||| || || ||| ||| Sbjct 8478 CTTCC---ACAAACTTGGGCAGCGCCACTGACGCCAAGTTGCACACCGCAACCTCGTCCG 8534 Query 111273 TATCTGTGTACTCTAAAATTTCTGTACATAAGTT---GGAACTCTTAATCGTCCCCAAAT 111329 | |||||||| | | || || ||||| ||| | ||||| || | || Sbjct 8535 GAGACGTGTACTCCATCACCTCACAGCACAAGTTACTGGATCGG---ATCGTGCCAAGAT 8591 Query 111330 TCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 111389 ||| || || ||| ||| ||| |||||||| ||||| ||||| |||||||| Sbjct 8592 TCTGCTGATTGGACTTACGATTGGCCGCGTCCTTGTAAAGCATAAAGGGCACCCCCGTCT 8651 Query 111390 CCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTG--- 111445 | |||||| | | || || ||| ||| | ||| | | || | ||| Sbjct 8652 CAATCTGTGCGTCCAAGATGGCAAACCACAACTGCTGCGCATTG----ATCGTCTTGCGA 8707 Query 111446 GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TC 111504 || ||||||||| ||| ||| || |||||||| ||||| || || ||| | || || Sbjct 8708 GCACGTCCCTCCTTCTCATACGTTTCGTAGAGGGTCTCAAATTCATCTCCC-CAGCACTC 8766 Query 111505 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCAC--CTTCCTCAACC 111562 | ||||||| || || | || |||||| || | | ||| | ||| ||| || || Sbjct 8767 GTAGAGACCAGGAGCTTCGTTTGGACAAAACAAACTCCACTTGCCATTACTT--TCCACT 8824 Query 111563 CGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCT 111622 || |||||||| || || | ||||| || | |||| | || | || | | Sbjct 8825 CGTTTCATGAACAGATCAGATATCCATAGAGCGTAAAACAAGTCACGCGCTCGGTGCAGT 8884 Query 111623 TCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCA 111682 || || || || ||| | || |||||||| | | || || |||||||| || Sbjct 8885 TCACTGCCGTGATTTTTTCGGAGATCGAGGAACTCAAACACGTCTGCATGCCATGGTTCC 8944 Query 111683 AGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTG 111739 | |||| ||| | || || || || || ||| |||| | ||||| || || ||| Sbjct 8945 AAGTAGATTGCAAAGGAACCTTTGCGTTTACCTCCACCTTGGTCCACATACCGAGCCGTG 9004 Query 111740 GCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATA 111799 ||||||| ||||| | ||| || || ||||| | || || || || || || || Sbjct 9005 TCGTTAAACACGCGCAACATGGGGATGATACCGTTGGAAGACCCGTTAGTACCACGGATG 9064 Query 111800 CGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGA 111858 || | || | |||| | || || ||| ||||||||||| || ||||||||||| Sbjct 9065 T-AGCTGTTCGTAGCTCGGATATTGTGCATGCTGATCCCAATACCTCCCGCCCACTTTGA 9123 Query 111859 GATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGC 111918 ||| ||||| | | | | || ||||||| || | ||||| || || | |||| Sbjct 9124 GATACAAGCACATTGCTTCAATGTATCATAGATTCCTTCAATTGAATCATCTTGCATGGC 9183 Query 111919 GATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGT 111978 | | || || || | ||||| | ||| || |||||||| || | || || || Sbjct 9184 AAGTAAAAAACACGAAGATAATTGCGGCCGTGGAGTGCCAGCATTAAACAACGTGGGCGT 9243 Query 111979 TGCGTG---AATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAAT 112035 || || || |||| | ||| |||||| ||||| ||||| || | | | ||| Sbjct 9244 CGCATGGGTAAAGAACTT---TTGAGACATCAATTCGTACGTCTCTAAAGCTGCTTGAAT 9300 Query 112036 GTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAG 112095 || | || || || | || || ||||| | ||| | ||| || ||| | | Sbjct 9301 GTTGCTCTTATGAATCCCAAGAGCAACGCGCATAATCATTTGCTGGGGTCGTTCAACCAC 9360 Query 112096 GATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAA 112155 |||||| | || ||| || | |||| || ||||| | ||||||||| | | Sbjct 9361 TTTGCCATTCACGCGGAAAAGGTAACCTCTCTCCAGTGTTTTAAACCCAAAGTAATCGTA 9420 Query 112156 ATCATAGTCCCG 112167 ||| ||||||| Sbjct 9421 CTCAAAGTCCCG 9432 >seq195 Length=24554 Score = 149 bits (164), Expect = 8e-31 Identities = 386/577 (67%), Gaps = 16/577 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || ||||||||||||||||||||||| || | ||| || | ||||| Sbjct 23576 TATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGAAGTGAGATCATGTCCATC 23517 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 |||| || || ||||| ||| |||| | |||||| | | | || ||||| Sbjct 23516 CAGTCGAACGGGTTCTTGACGTGGTAAATCTTAGACACCCCCAATGAGTACAGCAGACGG 23457 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 122550 || | ||| |||| ||||||| | |||| | |||||||| |||||||| | | Sbjct 23456 TCAGCCACGAACTCGATGTACTGGCACATGAGCGTTGAGTTCATGCCGATGAGCTCAACA 23397 Query 122551 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 122610 ||||| | ||| | | ||| | | ||| || | ||||| || | ||| |||| Sbjct 23396 GGGAGGGAGTCACACACAAACTCGTGCTCGATAGCCACCGCGTCACGAATGATCTCGTGC 23337 Query 122611 ATA-GTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTC---CACGGCAAACTC 122666 | | | || | | | |||| || || | || | | || |||||| || Sbjct 23336 ACACGACTCTCCGGCAGCT-TATTGACCA--GTTTGGAGTACATGAGGCA-GGCAAAGTC 23281 Query 122667 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAG 122726 || | ||||||||| || ||||| ||||| || |||| ||||| |||||||| Sbjct 23280 GGTATGCATACCCTCATCACGACTGATAAGCTCATTCGAAAAGCTGAGACCAGGCATGAG 23221 Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 ||| || ||||||| ||| | || | |||||| || || |||||||||||||||||||| Sbjct 23220 ACCACGTTTCTTCAGCCAGAAGATGGAGCAGAAGGAGCCAGAGAAGAAGATACCCTCCAC 23161 Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGAC-TTTGCATCAAACCATTTCA 122845 | || ||||||| ||| || || ||| | || ||| || | ||| |||| || | Sbjct 23160 TGAGGCGAACGCAAGAAGACGCTCTGCGTATGA-CGACACACGCGGGTCACACCACTTGA 23102 Query 122846 TTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC-TTCA--AATAACT 122902 |||||| || ||||||| | ||| || | ||| | ||||| || || | | Sbjct 23101 GTGCCCAAGCGGCTTTCTTCTTCACACACGGGATAGTGTCAATGGCACGCAGCAAAAGGT 23042 Query 122903 GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 122939 ||||| | ||| | ||||| ||||| ||||||| Sbjct 23041 CCTTCTCTACAG---CGTCCTTGATGTACGTGTCAAT 23008 >seq9529 Length=1512 Score = 140 bits (154), Expect = 4e-28 Identities = 261/381 (69%), Gaps = 2/381 (1%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 ||||||||||| |||||||| | | || ||||||| ||||| | | || || || Sbjct 430 CGATCAAAACGCCCCGGGCGCAACAAAGCAGCATCAAGTATATCAGCCCTGTTGGTTGCA 371 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 ||||| || | || ||||| | |||||||||||||| ||||| || | |||||| Sbjct 370 GCAATCACAATGATACCAGTGTTCCCTTCAAAGCCATCCATTTCGGTAAGAAGCTGATTA 311 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCT-GGCATACCACCAGCACTGCGTTGCTTGCCCAC 11628 | |||||||||| |||||||||| || | || |||| | | ||| | || || Sbjct 310 AGGGTTTGTTCTCGCTCATCATTTCCTCCACCTA-TTCCAGTTCCTCTCTGCCTACCAAC 252 Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688 |||||||| ||||| | ||| ||||| || || |||||| ||| ||| || || Sbjct 251 TGCATCAATTTCATCCACGAAAACAATGCAAGGGGCATTTTCCTTGGCCTTTTTGAACAG 192 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCA 11748 || || || || || || | ||||||||||||||| ||||| | | | ||| Sbjct 191 GTCACGCACTCTAGATGCTCCAATACCAACAAACATCTCAACAAACTCAGAACCTGAGAT 132 Query 11749 CTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGT 11808 || ||| || ||| | ||| || || ||||| ||| || | ||||| || || Sbjct 131 AGAGAAGAAAGGTACACCAGCTTCCCCTGCAATGGCCTTGGCTAGCAAAGTCTTCCCAGT 72 Query 11809 ACCTGGCTTACCCGCGAGAAG 11829 ||||| |||| | ||||| Sbjct 71 CCCTGGTGGACCCACCAGAAG 51 >seq35289 Length=16108 Score = 98.7 bits (108), Expect = 1e-15 Identities = 206/300 (69%), Gaps = 19/300 (6%) Strand=Plus/Plus Query 11446 CTTG-CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAG 11504 |||| || |||||||||||||| || | | || | |||||| | ||| || || |||| Sbjct 2716 CTTGACGGTCAAAACGACCCGGACGCAATAATGCTTTATCAAGCACATCAACACGGTTAG 2775 Query 11505 TGGCCGCAATAACCACAATGCCAGTCTCATT---GTCAAAGCCATCCATCTCGGTGAGTA 11561 | || |||||| |||||| | ||||| ||||| || |||||||| || | Sbjct 2776 TTGCAGCAATA---ACAATGACGCCTTCATTACCTTCAAAACCGTCCATCTCTACAAGCA 2832 Query 11562 ATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATAC--CACCAGCACTGCGTTG 11619 ||| || | |||||||| | ||||||| || | | | ||| | || ||| || Sbjct 2833 TTTGGTTTAAGGTTTGTTCACGCTCATCA--TGACCACCTCCTGTACCTGAACCGCGGTG 2890 Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGG---TTGA-TTTTCGCGGG 11675 ||||| ||||||||||||||||| |||| |||||||| ||| ||||| | Sbjct 2891 ACGACCCACTGCATCAATCTCATCAATAAAGATGATACATGGCGCGTGACGCTTCGCTTG 2950 Query 11676 CGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT 11735 | ||||| | || || || | ||||||||||| || ||||| || ||||||| Sbjct 2951 C----TCAAACATGTCACGGACACGGGACGCACCCACACCCACGAACATTTCTACAAAGT 3006 >seq1997 Length=5797 Score = 98.7 bits (108), Expect = 1e-15 Identities = 327/503 (65%), Gaps = 13/503 (3%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || ||||| || ||||| | ||||||||| || ||||| ||||| | || || || Sbjct 2140 CCTTCATCACGTGAAATCAATTCATTTGAAAAAGTAAGACCCGGCATCAATCCACGTTTT 2199 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||||||||||| |||| ||||||| || ||||| ||||| || || || ||||| Sbjct 2200 TTCAACCAATAGATAGAACAGAATGCTCCTGAGAAAAAGATTCCTTCTACGGCTGCAAAA 2259 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 |||| || | ||| || || || | | |||| |||||| | ||||| | | Sbjct 2260 GCAATCAGTCTTTCAGCAAA------TGAATCGGATTCAATCCATTTTAAAGCCCAGTCC 2313 Query 122857 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCAGAT 122916 || || |||| ||| || | || | || | || | ||| | |||||| | | Sbjct 2314 GCTTTTTTCTTAATTGCCGGAAATACTTCCAAAGCGTGGAAAAGCTGGTCCTTTTCTGCT 2373 Query 122917 CCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCAT-TTCATT 122975 |||| || | || | ||||||| ||||| ||||||| || | | | ||| Sbjct 2374 TCATCTTTTACATACGTATCAATCAGAAGAGAATAGGTTTCGCTGTGGATATTCTCCATC 2433 Query 122976 ATGGCATTGATATGCGTAGAATGAGCGCGCTT-CGCTTATCTGAACCTCATCCGCAAAAT 123034 || | ||| || ||||||| | |||| || ||| ||||| || | |||||| Sbjct 2434 AT-GATTTGGAATCCGTAGAAAAATTTAGCTTCCGGATAT-TGAACTTCGTTTACAAAAT 2491 Query 123035 TGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATGTACT 123094 | | | || ||| ||||| || || || ||||||| || || | || | | Sbjct 2492 TCTCTGCCAGGTTTTCATTCACAATACCGTCTGATGCAGCAAAAAAAGCTAAAATATGTT 2551 Query 123095 TTATGAATTTCTTTTCATTTTCATTCAG---GGTCTTCCAGTCGTCAAGATCTTTGGACA 123151 | || || | || |||| | |||||| | |||||||| | ||| | | || Sbjct 2552 TGATAAAATATTTCTCATCATTATTCAGCTTATTGTTCCAGTCTGATAAATCCTGGTGCA 2611 Query 123152 AATCAACTTCTTCCGCAGTCCAA 123174 |||||| |||||| ||||||||| Sbjct 2612 AATCAATTTCTTCGGCAGTCCAA 2634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627753004634400