Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq195 167 3e-36 seq1997 89.7 6e-13 >seq195 Length=24554 Score = 167 bits (184), Expect = 3e-36 Identities = 558/838 (67%), Gaps = 43/838 (5%) Strand=Plus/Minus Query 129716 TCCAGC-TTGCCATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT 129774 |||||| ||| || || || || |||||||| |||||||| ||||| || | ||| | Sbjct 23589 TCCAGCCTTGGAGTATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCCCTG-AAG-T 23532 Query 129775 GATAT--TCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCC-AAT 129831 || || | ||||| | || || |||||||| || |||| | ||| || ||| Sbjct 23531 GAGATCATGTCCATCCAGTCGAACGGGTTCTTGACGTGGTAAATCTTAGACACCCCCAAT 23472 Query 129832 CTGTTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCAT 129891 || || ||||| || | ||| |||| ||||||| |||| | |||||||| Sbjct 23471 GAGTAC-AGCAGACGGTCAGCCACGAACTCGATGTACTGGCACATGAGCGTTGAGTTCAT 23413 Query 129892 ACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTC 129951 |||||||| | | ||||| | ||| | | ||| | | ||| || |||| || || Sbjct 23412 GCCGATGAGCTCAACAGGGAGGGAGTCACACACAAACTCGTGCTCGATAGCCACCGCGTC 23353 Query 129952 CCGCACGATGGCGTGAATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTT 130010 || | ||| |||| | | ||| | ||| | ||||| || || ||| |||| Sbjct 23352 ACGAATGATCTCGTGCACACGACTCTCCGGCAGCT-TATTGACCA--GT-TTG--GAGTA 23299 Query 130011 C------CACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGA 130064 | || |||||| || || | |||||| ||||| ||| || |||||||| | Sbjct 23298 CATGAGGCA-GGCAAAGTCGGTATGCATACCCTCATCACGACTGATAAGCTCATTCGAAA 23240 Query 130065 AGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAG 130124 ||| ||||| ||||||||||| || ||||||| |||||| || | || || ||||||| Sbjct 23239 AGCTGAGACCAGGCATGAGACCACGTTTCTTCAGCCAGAAGATGGAGCAGAAGGAGCCAG 23180 Query 130125 AGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC- 130183 |||||||||| |||||||| | |||||||||| |||||||| || | || || || Sbjct 23179 AGAAGAAGATACCCTCCACTGAGGCGAACGCAAGAAGACGCTCTGCGTATGA-CGACACA 23121 Query 130184 TTTGTATCAAACCACTTCATCGCCCACTGCGCCTTT-TTCTCGATACACGGGACGGT--- 130239 | ||| ||||||| | ||||| ||| |||| |||| | |||||||| || Sbjct 23120 CGCGGGTCACACCACTTGAGTGCCCA-AGCGGCTTTCTTCTTCACACACGGGATAGTGTC 23062 Query 130240 -CTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGA 130298 ||| ||| |||| || |||||| ||| | || ||||||||| | || |||| Sbjct 23061 AATGGCACGCAGCAAA-AGGTCCTTC---TCTACAGCGTCCTTGATGTACGTGTCAATGA 23006 Query 130299 GTTTTGAATATGTTTCGCCATGGACCAT-TTCATTATGGCA--CTGATACGCGTAGAAAG 130355 || ||||| || | | || || ||| || ||| |||| | |||||||| Sbjct 23005 GTAGCGAATAGACCTC-CGAGTGA--ATGTTCTCGATAGCAATCTGAAAACCGTAGAAAC 22949 Query 130356 AGCGCGCTTCGCTTATCTGTACCTCATCTGCAAAATTGTTATTG--ATATTCTCAAAAAC 130413 | || |||||| | ||| || || | ||| || | | || | | || ||| || Sbjct 22948 ACCGAGCTTCGGGAACCTGCACTTCGT-TGCTGAAGT-TCATGGCCAGGTTTTCATTCAC 22891 Query 130414 AATTCCATCGGACCCAGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTC 130473 ||| ||||| | ||||| || || || | || ||| || || | | || || || Sbjct 22890 AATGCCATCACTGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCGTTGTC 22831 Query 130474 GTTCAGGGTCTTCCAGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCAA 130531 | ||| | ||||| || | || || | | ||||| | |||||| || |||||| Sbjct 22830 AGTGAGGTTTTTCCAATCTTTAATGTCGTGCACCAGATCCAGCTCCTCAGCCGTCCAA 22773 >seq1997 Length=5797 Score = 89.7 bits (98), Expect = 6e-13 Identities = 240/366 (66%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 118517 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 118576 ||| || |||| || ||||| || || || | |||| || || || | |||||| || Sbjct 29 AATGAAGGCATCTGCCAGACCCTGAACCCCTAATCCAACCGGACGGTGACGCATATTTGA 88 Query 118577 CTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGT 118636 || || | || |||||| | || || || || ||| | || || ||| | || Sbjct 89 ATTTTCTGCTTCCGGAACCGGATAATAGTTTCTGTCAATGACCTTGTTCAGGTTTCTTGT 148 Query 118637 GACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGAC 118696 ||| ||||| | | || |||| ||||| | || ||| || | | || Sbjct 149 TACACGTTTTGTTACGTTATAAAGCAGTTCGTGGTTGAA-CTGTCCGTTT-----TCCAC 202 Query 118697 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 118756 | || | || | | ||| || ||||| ||||| || | | ||||| ||| |||||| Sbjct 203 AAACATTGGCAATGAGATAGAAGCCAGGTTACATACCGCAATTTCATCTTTAGAAGTGTA 262 Query 118757 CTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 118816 ||| || ||||| || |||| ||| ||| || || |||| ||| || || ||||| Sbjct 263 CTCCATGATTTCTGTACACAGGTTAGAAGAGCGGATTGTTCCCAGGTTTTTCTGGTTTGA 322 Query 118817 CTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTT 118876 || ||| |||||| || || ||||||||||| || || || || |||| || | Sbjct 323 TTTACGGTTTGCCGCATCTTTATACAGCATGTATGGTGTTCCGGTTTCAATTTGAGATTC 382 Query 118877 GAGAAT 118882 ||||| Sbjct 383 CAGAAT 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618160467892840