Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq451 197 2e-45 seq195 138 1e-27 seq35289 116 4e-21 seq9529 113 5e-20 seq902 98.7 1e-15 seq7645 82.4 9e-11 >seq451 Length=16219 Score = 197 bits (218), Expect = 2e-45 Identities = 1107/1741 (64%), Gaps = 52/1741 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| | |||||||| || | || |||||| | ||||| | | | Sbjct 9348 CCCCAGCAAATGATTATGCGCGTTGCTCTTGGGATTCATAAGAGCAACATTCAAGCAGCT 9289 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT---CACGCAACACCAACCCTC 104338 || ||||| ||||| |||||| ||| | |||| || || || || || || | Sbjct 9288 TTAGAGACGTACGAATTGATGTCTCAA---AAGTTCTTTACCCATGCGACGCCCACGTTG 9232 Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 || |||||||| || ||| | || ||| | || || || | | |||| | || Sbjct 9231 TTTAATGCTGGCACTCCACGGCCGCAATTATCTTCGTGTTTTTTACTTGCCATGCAAGAT 9172 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 || ||||| | || ||||||| || | | | | ||||| |||||||||||||| Sbjct 9171 GATTCAATTGAAGGAATCTATGATACATTGAAGCAATGTGCTTGTATCTCAAAGTGGGCG 9112 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGAC 104517 || ||||||||||| ||| || || | |||| | || | || || || || || Sbjct 9111 GGAGGTATTGGGATCAGCATGCACAATATCCGAGCTACGAACAGCT-ACATCCGTGGTAC 9053 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || || || | ||||| || || ||| | ||||| ||||||| ||| || || || Sbjct 9052 TAACGGGTCTTCCAACGGTATCATCCCCATGTTGCGCGTGTTTAACGACACGGCTCGGTA 8993 Query 104578 TGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 ||| | |||| ||| || || || || || | ||| |||| | || |||||||| Sbjct 8992 TGTGGACCAAGGTGGAGGTAAACGCAAAGGTTCCTTTGCAATCTACTTGGAACCATGGCA 8933 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 || || | | |||||||| || | || || || || || || | | | Sbjct 8932 TGCAGACGTGTTTGAGTTCCTCGATCTCCGAAAAAATCACGGCAGTGA-ACTGCACCGAG 8874 Query 104695 C-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 | || || | || | |||||| ||||| | ||||| |||||||| |||| || | Sbjct 8873 CGCGTGACTTGTTTTACGCTCTATGGATATCTGATCTGTTCATGAAACGAGTGGAAAGTA 8814 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGT 104812 |||||| ||| | | ||||||||| || | || |||||||||| ||| ||| | ||| Sbjct 8813 ATGGCAAGTGGAGTTTGTTTTGTCCAAACGAAGCTCCTGGTCTCTACGAGTGCTG-GGGA 8755 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTG 104872 || || ||||| |||| ||| || ||| ||| | || || || || |||| | Sbjct 8754 GATGAATTTGAGACCCTCTACGAAACGTATGAGAAGGAGGGACGTGCTCGCAAGACGAT- 8696 Query 104873 CCAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 | | || | | ||||| || || | | | || | ||||| || || | Sbjct 8695 CAATGCGCAGCAGTTGTGGTTTGCCATCTTGGACGCACAGATTGAGACGGGGGTGCCCTT 8636 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 ||||||||||| ||||| || | ||| ||||| ||||| | || |||| Sbjct 8635 TATGCTTTACAAGGACGCGGCCAATCGTAAGTCCAATCAGCAGAATCTTGGCACGATC-- 8578 Query 104992 GAGTTCCAATCTC-TGTAC--AGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 | |||| | | ||| | || | |||| | || || ||| || || Sbjct 8577 -CGATCCAGTAACTTGTGCTGTGAGGTGATGGAGTACACGTCTCCGGACGAGGTTGCGGT 8519 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGA 105108 ||| ||| | || ||| | || || ||||||| |||||| |||| | || | Sbjct 8518 GTGCAACTTGGCGTCAGTGGCGCTGCCCAAGTTTGTGGA-----AGACGGTG-TGTTCAA 8465 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 || || || |||| || || || |||||| ||||| |||| ||| ||||| Sbjct 8464 CTACAAATTGCTGTACGACGTGACCAAGGTCGTCACCCGCAACCTCAACAAAGTCATTGA 8405 Query 105169 TAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 || | ||||| |||| ||| ||||| ||||| || ||| | || ||||| | | Sbjct 8404 CGTCAACTACTACCCGGTTGCAGA-AGCTCGAAAATCCAACATGCGCCATCGTCCCGTGG 8346 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287 | | |||||||| ||||| || |||| || |||| | || ||||| | Sbjct 8345 GAATTGGTGTTCAAGGTCTGGCCGATGCTTTTCTTCTCATGAACTTTGCGTTTGAAAGTG 8286 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 | || || ||| | || | ||| ||||||||||| || |||| | | ||| Sbjct 8285 AAGAGGCTCGTGAACTGAACAAGAACATCTTTGAGACCATCTACTACGCTTCGATGGAGA 8226 Query 105348 CGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 105407 | | ||| | || ||| ||||| || || || || |||| || || || Sbjct 8225 CTTCTATGGAGATTGCCAAGGAACTGGGTCCGTACGAGACGTTCCAGGGCTCCCCTGC-- 8168 Query 105408 CA-CAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACCAAG----CT--TCACTA 105459 || ||||||| ||| |||||||| |||||| |||| || | || || | Sbjct 8167 CAGCAAGGGGATCTTCCAATTTGACATGTGG---GGTGTCACTCCGTCGTCTGGTCTTTG 8111 Query 105460 CGACTGGGAAGCTCTCAAG--GAACG-CATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516 |||||| || | ||| ||| | |||| || | ||| |||||||| | | || Sbjct 8110 GGACTGGACCGCCTTGAAGGAGAATGTGATCA---AGCACGGTATTCGTAACTCTTTGCT 8054 Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 105576 ||||||| |||||||| || || || || || ||| |||| || ||||||| | | || Sbjct 8053 AGTGGCTCCTATGCCAACTGCTTCAACTGCCCAGATCCTGGGCAACAATGAATCCATCGA 7994 Query 105577 ACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 105636 || ||||| | ||||| || | | ||||| || |||||| ||| ||||| Sbjct 7993 GCCGTACACATCAAACATGTACAATCGTCGCGTACTCGCTGGTGAGTTTACGATCGTCAA 7934 Query 105637 CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCT 105696 ||||||||| || | || || | || | || ||||| | || | ||| Sbjct 7933 CAAGCATCTGATGAAGGAGCTGATTGATTTGGGCATCTGGACGCCTGAAGTCCGTAATCA 7874 Query 105697 CATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAA 105756 || |||| | ||||| || | ||||| | | |||||| | | || ||| | Sbjct 7873 AATCTTGAACGACGGTGGATCGGTGCAAAAGGTCAAGACCATTCCAGACCATATCAAGGA 7814 Query 105757 GTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCG 105816 |||| || || |||||||||||| ||| ||| | |||||| | || ||||| Sbjct 7813 AAAGTACAAGACCGTGTGGGAAATCAAGCAAAAGTCGGTCTTGGACATGTCGGCTGATCG 7754 Query 105817 TGGTCGCTT-CATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGT 105875 ||| ||||| |||| || |||||| | ||| | ||| | ||| ||||| Sbjct 7753 TGG-CGCTTACATTTGCCAGAGTCAATCGCTCAATATTCACATTGCCGATCCGACGATCA 7695 Query 105876 CCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATT 105935 || ||| | |||||||| | || ||||| ||||| ||||| ||||| ||||| | Sbjct 7694 GTAAACTCACATCTATGCATTTCTATGCATGGAAAAAGGGCCTCAAGACGGGCATGTACT 7635 Query 105936 A 105936 | Sbjct 7634 A 7634 >seq195 Length=24554 Score = 138 bits (152), Expect = 1e-27 Identities = 193/268 (72%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 94671 ACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCA 94730 |||||| |||| ||| || ||||| | || |||||| | | | | ||||| | Sbjct 23004 ACTCATTGACACGTACATCAAGGACGCTGTAGAGAAGGACCTTTTGCTGCGTGCCATTGA 23063 Query 94731 AACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAA-GT 94789 || | |||||| | | |||||||| | |||||| | ||||||| ||| | || Sbjct 23064 CACTATCCCGTGTGTGAAGAAGAAAGCCGCTTGGGCACTCAAGTGGTGTGACCCGCGTGT 23123 Query 94790 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 ||| | | || ||||| || | || || || | || ||||||||||||||||||| Sbjct 23124 GTCGT-CATACGCAGAGCGTCTTCTTGCGTTCGCCTCAGTGGAGGGTATCTTCTTCTCTG 23182 Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 | ||||||||| | || | ||||| ||||| || ||||||||||| |||||| |||| | Sbjct 23183 GCTCCTTCTGCTCCATCTTCTGGCTGAAGAAACGTGGTCTCATGCCTGGTCTCAGCTTTT 23242 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGG 94937 | || ||||||||| |||||| ||||| Sbjct 23243 CGAATGAGCTTATCAGTCGTGATGAGGG 23270 >seq35289 Length=16108 Score = 116 bits (128), Expect = 4e-21 Identities = 254/375 (68%), Gaps = 18/375 (5%) Strand=Plus/Plus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 ||| ||||| ||||| ||||| | | || | |||||| | |||||| || || || || Sbjct 2720 ACGGTCAAAACGACCCGGACGCAATAATGCTTTATCAAGCACATCAACACGGTTAGTTGC 2779 Query 9583 GGCGATGACAACAATACCTGTTTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTG 9639 || || |||| | ||| |||||| |||||||| ||||||||| | | ||| Sbjct 2780 AGCAATAACAATGACGCCT---TCATTACCTTCAAAACCGTCCATCTCTACAAGCATTTG 2836 Query 9640 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC--ACCAGCACTGCGTTGCTTT 9697 ||| | |||||||| || ||||||| | | | | ||| | || ||| || Sbjct 2837 GTTTAAGGTTTGTTCACGCTCATCATGACCA--CCTCCTGTACCTGAACCGCGGTGACGA 2894 Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGG---TTGA-TTTTCGCGAGCGAC 9753 ||||| ||||||||||||||||| |||| ||| ||||| ||| ||||| || Sbjct 2895 CCCACTGCATCAATCTCATCAATAAAGATGATACATGGCGCGTGACGCTTCGCTTGC--- 2951 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 ||||| | || || ||||| || |||||||| || ||||| || ||||||| | Sbjct 2952 -TCAAACATGTCACGGACACGGGACGCACCCACACCCACGAACATTTCTACAAAGTCAGA 3010 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 | ||| || ||| || || || | |||||| ||||| ||| || | | || Sbjct 3011 ACCTGAAATGCTGAAGAAAGGAACCTTCGCTTCACCAGCAATTGCTTTAGCTAATAACGT 3070 Query 9874 CTTACCCGTACCTGG 9888 ||||| ||||| || Sbjct 3071 TTTACCAGTACCCGG 3085 >seq9529 Length=1512 Score = 113 bits (124), Expect = 5e-20 Identities = 253/370 (68%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| || || || || | | || ||||||| |||||| | | || || || Sbjct 430 CGATCAAAACGCCCCGGGCGCAACAAAGCAGCATCAAGTATATCAGCCCTGTTGGTTGCA 371 Query 9584 GCGATGACAACAATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9642 || || |||| ||||| || ||| | ||||| |||||||| || || | ||| || || Sbjct 370 GCAATCACAATGATACCAGTGTTCCCT-TCAAAGCCATCCATTTCGGTAAGAAGCTGATT 312 Query 9643 AATAGTTTGTTCCCGTTCATCATTCGCTGG-CATACCACCAGCACTGCGTTGCTTTCCCA 9701 || |||||||| || |||||||| || | || |||| | | ||| | || | Sbjct 311 AAGGGTTTGTTCTCGCTCATCATTTCCTCCACCTATT-CCAGTTCCTCTCTGCCTACCAA 253 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGA 9761 | |||||||| ||||| | ||| || ||||| || |||||| || || || | Sbjct 252 CTGCATCAATTTCATCCACGAAAACAATGCAAGGGGCATTTTCCTTGGCCTTTTTGAACA 193 Query 9762 GATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819 | || || ||| || | || || | ||||||||||||||| ||||| | | | | Sbjct 192 GGTCACG--CACTCTAGATGCTCCAATACCAACAAACATCTCAACAAACTCAGAACCTG- 136 Query 9820 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 | || | || ||| || ||| || ||| || |||||||| ||| || | |||||| | Sbjct 135 AGATAGAGAAGAAAGGTACACCAGCTTCCCCTGCAATGGCCTTGGCTAGCAAAGTCTTCC 76 Query 9879 CCGTACCTGG 9888 | || ||||| Sbjct 75 CAGTCCCTGG 66 >seq902 Length=10209 Score = 98.7 bits (108), Expect = 1e-15 Identities = 136/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG--CGACTTCAAAGA 9761 || |||||||| |||||||||| ||||||||| | ||| ||| | ||||| |||| | Sbjct 1784 GCGTCAATCTCGTCAATGAAGATGATGCATGGC-GCTTTCCGCTTGGCCGACT-CAAACA 1727 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 | || | || || || || ||||| || |||||||| |||| | | | ||| Sbjct 1726 GGTCTCTCACGCGACGCGCACCTACACCCACGTACATCTCCTCAAACTCGGATCCAGAAG 1667 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || ||| || ||| || || |||||||||||||| || || || |||||||||| Sbjct 1666 AGTAGAAGAATGGCACACCAGCCTCTCCCGCAATGGCTCGAGCCAGCAGTGTCTTACCCG 1607 Query 9882 TACCTGG 9888 |||| || Sbjct 1606 TACCGGG 1600 >seq7645 Length=1876 Score = 82.4 bits (90), Expect = 9e-11 Identities = 244/372 (66%), Gaps = 16/372 (4%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || || || || | ||||| ||| || | ||| ||||||||||| || Sbjct 954 ATCAAACCGGCCCGGCCGCAACAGCGCTGAATCCAGAACATCCGGCCGATTCGTCGCCGC 1013 Query 9586 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | |||| || || |||| | | || || |||||||| ||||| || || || Sbjct 1014 AAGAACAATAACCCCGCTGTTCCCAGAG--AACCCGTCCATCTCCGTCAACAGCTGATTG 1071 Query 9644 ATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9701 || || || |||| ||||||||| ||| || || |||| | | |||| | || | Sbjct 1072 ATTGTCTGCTCCCTTTCATCATTACCGCCACCAAGCC--CAGCCCCCCTTTGCCTCCCTA 1129 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTTCA 9757 | || ||||| ||||| || ||||||||||| || ||| || || | || Sbjct 1130 CCGCGTCAATTTCATCGATAAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----TCG 1185 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 || || |||||||| || || || ||||| || || | ||| || || | | || Sbjct 1186 AACAGGTCCCGTACCCGGGACGCACCTACACCGACGAAGAGCTCGACGAACTCCGACGCC 1245 Query 9818 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 | || | ||||||||| | || || | | || ||||| || |||||||| Sbjct 1246 GCGCAGGAAAAGAAGGGGACCCCGGCCTCCCCTGAGACAGCCCGGGCCAGCAGAGTCTTG 1305 Query 9878 CCCGTACCTGGC 9889 ||||| || ||| Sbjct 1306 CCCGTCCCCGGC 1317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583001693680360