Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq195 145 8e-30 seq451 143 3e-29 seq135 105 7e-18 seq691 104 3e-17 seq9125 100 3e-16 seq5797 86.0 7e-12 seq1997 84.2 2e-11 >seq195 Length=24554 Score = 145 bits (160), Expect = 8e-30 Identities = 540/826 (65%), Gaps = 29/826 (4%) Strand=Plus/Minus Query 74456 CTTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTT 74515 ||| || || ||||| || ||||| ||||| ||||||||||| || | | ||||| | Sbjct 23583 CTTGGAGTATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGAAGTGAGATCAT 23524 Query 74516 CTCCATCCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTT---CTCCCCAAACTGTGC 74572 |||||||||||||| |||||||| | |||||| ||| | |||| || || | Sbjct 23523 GTCCATCCAGTCGAACGGGTTCTTGACGTGGTAAAT---CTTAGACACCCCCAA-TGAGT 23468 Query 74573 -CATGAGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGA 74631 || || || || ||||| || | |||||||| ||| | | |||||||| Sbjct 23467 ACAGCAGACGGTCAGCCACGAACTCGATGTACTGGCACATGAGCGTTGAGTTCATGCCGA 23408 Query 74632 TGAGTTTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATT--G 74689 |||| | || || | || | |||||| ||| | | || | | | | | Sbjct 23407 TGAGCTCAACAGGGAGGGAGTCACACACAAACTCGTGCTCGA--TAGCCACCGCGTCACG 23350 Query 74690 GACAATCTTGTGAAT--GTCTTTGGAAGGGCA-CTTTTCCCTCAGGTGAGAGTAAA-GCG 74745 | |||| ||| | | || | |||| ||| | ||| | ||||| | | | Sbjct 23349 AATGATCTCGTGCACACGACTCTCC---GGCAGCTTATTGACCAGTTTGGAGTACATGAG 23293 Query 74746 TCACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAA 74805 || |||||| || |||| || ||||| | || || | ||||||||||| | Sbjct 23292 GCA-GGCAAAGTCGGTATGCATACCCTCATCACGACTGATAAGCTCATTCGAAAAGCTGA 23234 Query 74806 GGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGA 74865 | |||||||| || ||||| ||||||| ||| ||||||| |||||||| ||| ||||| Sbjct 23233 GACCAGGCATGAGACCACGTTTCTTCAGCCAGAAGATGGAGCAGAAGGAGCCAGAGAAGA 23174 Query 74866 AGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG-CAT-CGGAAGT 74923 |||| || || || | || || || | ||| || | ||| | | | || || || Sbjct 23173 AGATACCCTCCACTGAGGCGAACGCAAGAAGACGCTCTGCGTATGACGACACACGCGGGT 23114 Query 74924 CAT-CCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTT 74982 || ||| | | ||||| | ||||| || || |||| ||| || || || Sbjct 23113 CACACCACTTGAGTGCCCAAGCGGCTTTCTTCTTCACACACGGGATAGTGTCAATGGCAC 23054 Query 74983 GGA--AGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTA 75040 | | | | | | |||||||| | | ||||||| | | ||||||| | || || || Sbjct 23053 GCAGCAAAAGGT--CCTTCTCTACAGCGTCCTTGATGTACGTGTCAATGAGTAGCGAATA 22996 Query 75041 CGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTG 75099 |||||| ||||| |||| | | | | ||| | |||||||| |||| || || | Sbjct 22995 GACCTCCGAGTGAATGTTCTCGAT-AGCAATCTGAAAACCGTAGAAACACCGAGCTTCGG 22937 Query 75100 CAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGG 75159 || ||| || || || || |||||| | | || || | || ||||| || || Sbjct 22936 GAACCTGCACTTCGTTGCTGAAGTTCATGGCCAGGTTTTCATTCACAATGCCATCACTGG 22877 Query 75160 CGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCC 75219 | || || || || || || ||||||||||| ||||| | ||||||||| || | || Sbjct 22876 CTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCGTTGTCAGTGAGGTTTTTCC 22817 Query 75220 AATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 |||| || | ||| | ||| ||| | |||||| ||||||| || Sbjct 22816 AATCTTTAATGTCGTGCACCAGATCCAGCTCCTCAGCCGTCCAAAA 22771 >seq451 Length=16219 Score = 143 bits (158), Expect = 3e-29 Identities = 320/472 (68%), Gaps = 10/472 (2%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||||| || ||| ||||||| |||||| || || ||||| || |||| || Sbjct 9285 GAGACGTACGAATTGATGTCTCAAAAGTTCTTTACCCATGCGACGCCCACGTTGTTTAAT 9226 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 ||||| || | || || | || || || | | || ||| | ||||| || Sbjct 9225 GCTGGCACTCCACGGCCGCAATTATCTTCGTGTTTTTTACTTGCCATGCAAGATGATTCA 9166 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || || ||||| || || | ||| | ||||| ||||| |||||| |||| ||| Sbjct 9165 ATTGAAGGAATCTATGATACATTGAAGCAATGTGCTTGTATCTCAAAGTGGGCGGGAGGT 9106 Query 53423 ATCGGTATCCAC-TGCTCGAACGTCCG---TGCGAACGGCACACCAATCAAGGGGACGAA 53478 || || ||| | ||| | || |||| | ||||| || || ||| || || || Sbjct 9105 ATTGGGATCAGCATGCAC-AATATCCGAGCTACGAACAGC-TAC--ATCCGTGGTACTAA 9050 Query 53479 CGGCGTC-GCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 ||| ||| || | || ||| | || ||| | ||||| || ||| ||||||| ||||| | Sbjct 9049 CGG-GTCTTCCAACGGTATCATCCCCATGTTGCGCGTGTTTAACGACACGGCTCGGTATG 8991 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 | |||| ||||| || || ||||| || || || || |||||| | || || ||||| | Sbjct 8990 TGGACCAAGGTGGAGGTAAACGCAAAGGTTCCTTTGCAATCTACTTGGAACCATGGCATG 8931 Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657 | ||| | | ||||| ||||| || || ||||| || ||| | || | Sbjct 8930 CAGACGTGTTTGAGTTCCTCGATCTCCGAAAAAATCACGGCAGTGAACTGCACCGAGCGC 8871 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGA 53709 ||||| ||||| ||||| ||||| | || || |||||| || ||||| Sbjct 8870 GTGACTTGTTTTACGCTCTATGGATATCTGATCTGTTCATGAAACGAGTGGA 8819 Score = 107 bits (118), Expect = 2e-18 Identities = 294/444 (66%), Gaps = 11/444 (2%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || ||||| |||| ||||| || |||||||| || || || || |||||| |||||||| Sbjct 8067 CGTAACTCTTTGCTAGTGGCTCCTATGCCAACTGCTTCAACTGCCCAGATCCTGGGCAAC 8008 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 || || | ||||||||||||| | ||||| ||| || || || || |||||| Sbjct 8007 AATGAATCCATCGAGCCGTACACATCAAACATGTACAATCGTCGCGTACTCGCTGGTGAG 7948 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 ||| || |||||||||| || | ||||| ||| | | || |||| || Sbjct 7947 TTTACGATCGTCAACAAGCATCTGATGAAGGAGCTGATTGATTTGGGCATCTGGACGCCT 7888 Query 55664 CAGATC--AAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGA-GATTC 55718 | || | | || ||| || |||| || || || || || || || |||| Sbjct 7887 GAAGTCCGTAATCAAATCTTGAACG--ACGGTGGATCGGTGCAAAAGGTCAAGACCATTC 7830 Query 55719 CTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC--TGAT 55776 | | | ||||||| | ||| ||| |||||||| || || || |||| | | Sbjct 7829 CAGACCATATCAAGGAAAAGTACAAGACCGTGTGGGAAAT--CAAGCAAAAGTCGGTCTT 7772 Query 55777 TGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT 55836 |||||| ||||||||||| || ||||| |||| || || || || || ||| Sbjct 7771 GGACATGTCGGCTGATCGTGGCGCTTACATTTGCCAGAGTCAATCGCTCAATATTCACAT 7712 Query 55837 GGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896 | |||| | | || | | || ||||| || || | ||||| ||||| || Sbjct 7711 TGCCGATCCGACGATCAGTAAACTCACATCTATGCATTTCTATGCATGGAAAAAGGGCCT 7652 Query 55897 CAAGACGGGTATGTACTATCTGCG 55920 ||||||||| ||||||||| |||| Sbjct 7651 CAAGACGGGCATGTACTATATGCG 7628 >seq135 Length=29154 Score = 105 bits (116), Expect = 7e-18 Identities = 175/253 (69%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 152027 GCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 |||| ||||| || || | ||||| ||||| || || ||| | || || || || | Sbjct 14144 GCGTAAAGATATAACGAGGACTGGCAGCATCTTTACCTCCTTGTAAGCGGGTACCGAATT 14085 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 |||| || || | || || || || |||| |||||||||| ||| |||| ||| | Sbjct 14084 GTCCTGATGGATACAGCAGTGGAAGATTATTGGATCCCACGAAATCCTGTGCCATATTGA 14025 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 | || || |||| |||||||| || ||||| || || || || | ||| | Sbjct 14024 CGATTGTCGAATGCAACGAAGCTTCACCATGATGATAAGCTGTATGTTCACTGCAGTAAC 13965 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266 ||||||||||||| ||||||| || | |||| || ||| | |||||| ||| || Sbjct 13964 CCGCCAACTGCGCGACCTTCACTTCACTAATCAGCTTTCGCTTCAAGCAGGCGAAAAGCA 13905 Query 152267 CCTTGCGCTGGGA 152279 |||| ||||| || Sbjct 13904 CCTTACGCTGCGA 13892 >seq691 Length=12351 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| || || ||||||||||| || | ||||||||| || || Sbjct 9303 GTGAAAATGTAACGAGCACTGGCTGCATCCTTGCCGCCCATTAAACGCGTACCAAACTGG 9362 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||||| || |||| | ||||||| || || || | || |||| ||| || Sbjct 9363 CCGATCGGCGACAGAAGGTGAATGTTGTTGCTTCCGACGAAATCCTGTGCCATGTTCACG 9422 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || | || || ||||| |||||||| | ||||||| ||||||||| Sbjct 9423 ATACAGCCCTGTAAACTTTGTTCGCCATGATGATACGCAGAATGCTCCGACACGTAGCCA 9482 Query 117485 GCCAGCTGAGCCACCTT 117501 ||||| || || ||||| Sbjct 9483 GCCAGTTGTGCAACCTT 9499 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 |||||| ||||| || | ||||| ||||||||||| || | ||||| |||||||| Sbjct 9302 CGTGAAAATGTAACGAGCACTGGCTGCATCCTTGCCGCCCATTAAACGCGTACCAAACTG 9361 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || ||| || |||| | ||||||| || ||||||| ||| |||| ||||| Sbjct 9362 GCCGATCGGCGACAGAAGGTGAATGTTGTTGCTTCCGACGAAATCCTGTGCCATGTTCAC 9421 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || |||||| | ||| ||| || || |||||||| | ||||||| | ||| || Sbjct 9422 GATACAGCCCTGTAAACTTTGTTCGCCATGATGATACGCAGAATGCTCCGACACGTAGCC 9481 Query 152208 CGCCAACTGCGCCACCTT 152225 |||| || || ||||| Sbjct 9482 AGCCAGTTGTGCAACCTT 9499 >seq9125 Length=1575 Score = 100 bits (110), Expect = 3e-16 Identities = 247/369 (67%), Gaps = 12/369 (3%) Strand=Plus/Plus Query 124671 GTAATCTTGCGCGTCACAAAC---TCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGA 124727 || |||||||| ||||| || ||| || ||| || |||||||||||||| || Sbjct 324 GTGATCTTGCGGGTCACGAAGGTTTCGCCACGGCGCGGC---GACTCGTGGTTGAAGAGG 380 Query 124728 ATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCA 124787 ||||| | ||||| |||| || || | |||||||| || || ||||| || | Sbjct 381 ATGCCGTTGCACGCGTACATGCCATAGGCTTCGCGGTAATTGACGGTGATCCAGTAGGCG 440 Query 124788 AAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTA 124847 | || |||| || |||| || || |||||||| |||||| |||| || || | Sbjct 441 TACAGTTTGGCGACCGCATACGGCGAGCGCGGGTAGAAGGGGGTGGTTTCCTTCTGTGGG 500 Query 124848 GGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAATTTGAATTT-TGA 124906 | || ||| | | || ||| |||||| || ||||||||||| | ||| | Sbjct 501 GTTTCCTGCACCAGGCCGTACAGCTCCGAGGTGGAGGCCTGATAGAAACGGGTTTTCTTT 560 Query 124907 AATAGAATTCGTTTGACGAATTGCCTCCAAGATCCGAAGGGTTCCCATGGCGTCCACATT 124966 || | | || || ||||| | ||| || ||||| |||||||| || |||| Sbjct 561 TCCAG-GCCCAGCAGGCGGATGGCCTCGAGGATGCGCAGGGTACCCATGGCATCGACATC 619 Query 124967 GGCGGTATACTCGGGCTGATCAAA--AGACAGTTTCACATGGGACTGGGCACCTAGGTTG 125024 |||||| || || ||| || || ||| | | || ||||| || || || |||||| Sbjct 620 GGCGGTGTATTCCGGCGCTTCGAAGCTGACCGCT--ACGTGGGATTGTGCGCCGAGGTTG 677 Query 125025 TACACCTCG 125033 || |||||| Sbjct 678 TAGACCTCG 686 >seq5797 Length=2401 Score = 86.0 bits (94), Expect = 7e-12 Identities = 239/362 (66%), Gaps = 10/362 (3%) Strand=Plus/Plus Query 53284 CACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGT 53343 |||||| || ||||||||| || ||| | | | ||| |||| |||| |||| Sbjct 633 CACGCCCACGCTGTTCAACAGCGGCACGCTGCGCTCGCAGCTGTCTTCGTGCTACCTGAC 692 Query 53344 GGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACAT 53403 || || || || || | ||||||||||| ||| || ||||||| |||| | Sbjct 693 CACGGTGCCCGACGA-TC--TGGACGGCATCTATGAGTCGATCAAGGAAAACGCCCTGCT 749 Query 53404 CTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACC 53463 ||||||| | || || | || | | |||| || ||| || || || | | Sbjct 750 GTCCAAGTTCGCCGGCGGCCTGGGCAACGACTGGACGCGCGTGCGCGCCCTGGGTTCGCG 809 Query 53464 AATCAAGGGGACGAACGGCG--TCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAAC 53521 ||||| || |||||||||| |||| | || | ||||| | ||| || ||||| Sbjct 810 CATCAAAGGCACGAACGGCGAGTCGCAG--GGCGTGGTGCCCTTCCTCAAGGTGGTCAAC 867 Query 53522 AACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTAC 53581 |||||||| | ||| |||||||| || ||||||||||| | || || ||| Sbjct 868 GACACGGCCGTGGCCGTGAACCAGGGCGGC---AAGCGCAAGGGCGCCGTCTGCACGTAC 924 Query 53582 CTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGAC 53641 || ||| | |||||| ||||| ||| || ||||||||||| ||| ||| ||| Sbjct 925 CTGGAGACCTGGCACCTGGACATCGAGGAATTCCTCGAGCTGCGCAAGAACACGGGCGAC 984 Query 53642 GA 53643 || Sbjct 985 GA 986 >seq1997 Length=5797 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/205 (69%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 74747 CACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAG 74806 ||| ||||| || ||| ||||||||| | ||||||||||| ||||| | ||| Sbjct 2118 CACTGCAAAATCACAATGTACGCCTTCATCACGTGAAATCAATTCATTTGAAAAAGTAAG 2177 Query 74807 GCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAA 74866 || ||||| | |||||| || ||||||||| |||| | |||||| | || ||| || Sbjct 2178 ACCCGGCATCAATCCACGTTTTTTCAACCAATAGATAGAACAGAATGCTCCTGAGAAAAA 2237 Query 74867 GATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCAT 74926 ||| ||||| || ||||| || | || | || || || || |||||| || Sbjct 2238 GATTCCTTCTACGGCTGCAAAAGCAATCAGTCTTTCAGCAAA---TGAATCGGATTCAAT 2294 Query 74927 CCAAGTCTGAGCCCATTCAGCTTTT 74951 ||| | |||||| || |||||| Sbjct 2295 CCATTTTAAAGCCCAGTCCGCTTTT 2319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546972906132200