Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq29522 116 2e-21 seq19013 98.7 4e-16 >seq29522 Length=371 Score = 116 bits (128), Expect = 2e-21 Identities = 84/96 (88%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 27107 TTATTATCCTGCGCC-CGGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCC 27165 |||| ||||| |||| |||||| ||||||||||||| ||||| ||||||||||||||| Sbjct 185 TTATAATCCTCCGCCACGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCT 244 Query 27166 AGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 27201 |||||||||||||| ||||||| ||||||||| || Sbjct 245 TGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAAAT 280 >seq19013 Length=720 Score = 98.7 bits (108), Expect = 4e-16 Identities = 319/487 (66%), Gaps = 20/487 (4%) Strand=Plus/Minus Query 2567 GCCCAGCCTTCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAG 2626 ||||||| ||| |||||| | | ||| |||| ||||||| || |||||||| Sbjct 595 GCCCAGCGGCTCCATCAATCGGTGGTGGTTGAACCAAGCCACCCATTCCAGCGTGGCCAG 536 Query 2627 TTCCACTTC-TGCACGGTTTTTCCAGCTCTTACG---GTGTATTACCTCCGCTTTGTAAA 2682 |||||| | ||| ||| || |||| | || ||| || ||||| || ||||| | Sbjct 535 TTCCACCGCCTGCTTGGTCTT-CCAGGGCCCGCGCCGGTGGATCACCTCGGCCTTGTAGA 477 Query 2683 GACCATTGATGCTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATG 2742 | || |||||| |||| |||| |||||||| || |||||| | || ||| | Sbjct 476 GCCCGTTGATGGTCTCGGCCAGGGCGTTGTCGTAGCTGTCGCCCTTGGAGCCCACTGACG 417 Query 2743 CCAGTAATCCGGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTT 2802 | | ||||| || || ||||| | ||| | |||| || || || || Sbjct 416 ACTCGATGCCGGCCTCAGCCAGACGCTCGCTGTAGCGGATGGACAGGTATTGCGATCCAC 357 Query 2803 TATCGCTGTGATGGATGGTGCCAGACG----GACGA-----CGGGCCCACAACGCCTGCT 2853 ||| |||||| | ||| || | || ||| | ||| ||||| | Sbjct 356 GATCCGAGTGATGCACCAGGCCTTGCGTCTGGCCGGGCTTGCGGTCGTACAGGGCCTGTT 297 Query 2854 CCAGCGCATCCAGCACGAATGTCGTTTCCATAGAC--GATGAGACCCGCCACCCCACGAT 2911 ||||||| || |||||||| || | ||| || | | | | |||| |||||||| Sbjct 296 CCAGCGCGTCGAGCACGAACTCGGTGTGCATCGAACTGCTCTGGC--GCCAGCCCACGAT 239 Query 2912 GTATCCGGCA-AACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGA 2970 | ||||| ||||| || | | |||||||| ||||| |||||||||| || || Sbjct 238 GCG-CCGGCTGAACACGTCCACCACGAACGCCACGTAGACCCAGCCCTGCCAGGTCGAGA 180 Query 2971 CGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTA 3030 |||| || || || | ||||||||||||| || || || || |||||| ||||| | Sbjct 179 CGTAGGTGAAGTCCGAGACCCACAGCTGGTTGGGCCGCTCGGCGCGGAACTGCCGGTTGA 120 Query 3031 CGCGGTC 3037 | ||||| Sbjct 119 CCCGGTC 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203207946085870