Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq10726 98.7 8e-16 seq776 98.7 8e-16 seq6884 89.7 4e-13 >seq10726 Length=1340 Score = 98.7 bits (108), Expect = 8e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 29902 GTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29961 ||| ||||| ||||| | || || || || ||| | || |||||| | || |||| Sbjct 552 GTGCGCGTCACCCAGCGTATGCACGAAGTCGCCCACGCCCAGGCCGGTGGCCTGCGCCAC 493 Query 29962 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 30021 ||||| || || || | ||||||||||||||| || || || ||||| ||||| || Sbjct 492 CATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGAAGATGTCGCC 433 Query 30022 CGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGC 30081 | |||||||||||| || ||||| ||||| |||||| ||||| ||| | Sbjct 432 GCTGCGCTGGTAGAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAACAGGTT 373 Query 30082 GTGGCACGG 30090 ||||||||| Sbjct 372 GTGGCACGG 364 >seq776 Length=11329 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 29954 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 30013 || |||| ||||| || || || | ||||||||||||||| ||||| || || || Sbjct 10630 TGGGCCAGCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAG 10571 Query 30014 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30073 |||||| | | |||||| ||||| || ||||| |||||| |||||| ||||| Sbjct 10570 ATGTCCGCGCTGCGCTGGTATAGCTGGCAGCTGAGCTTGCCGTCGGCCACGTAGAACTGG 10511 Query 30074 CACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30133 | | ||||||||| || || ||||| | || ||| ||||||||||| Sbjct 10510 AAGAAGGCGTGGCAGGGCATGAGCGCCATCTGCGGCAGGTCGGCCACGTTCCAGGCGCTG 10451 Query 30134 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA 30167 ||||||||||| | | || |||||| || ||| Sbjct 10450 ACGATGATGCGGCGGCTGTCCGGGTTGCTCTTGA 10417 >seq6884 Length=2068 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 29902 GTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29961 ||| ||||| ||||| |||| || || || || | || || || | || |||| Sbjct 1742 GTGCGCGTCGCCCAGCGTGTGCACGAAATCGCCGACGCCGAGACCCGTCGCCTGCGCCAC 1683 Query 29962 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 30021 ||||| ||| || || | ||||||||||||||| || || || ||||| ||||| || Sbjct 1682 CATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGAAGATGTCGCC 1623 Query 30022 CGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGC 30081 | ||| |||||||| || ||||| |||||| |||||| ||||| ||| | Sbjct 1622 GCTGCGCTGATAGAGCTGGCAGCTGAGCTTGCCGTCGACCACGTAGAACTGGAACAGCGA 1563 Query 30082 GTGGCACGG 30090 |||||||| Sbjct 1562 ATGGCACGG 1554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406134414141588