Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq14623 125 4e-24 seq32362 113 3e-20 seq19645 111 1e-19 seq20474 109 3e-19 seq25614 102 5e-17 seq34564 89.7 3e-13 >seq14623 Length=969 Score = 125 bits (138), Expect = 4e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||||||||| || || |||| || ||||| ||||||| || || || ||||||||| Sbjct 452 TCCTTTTGAATATTGTAGTCTGCCAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCAAAT 393 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | ||| || ||||| ||||| | ||| |||||||| |||||| ||||| Sbjct 392 ATCAGACGTTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTTACATTG 333 Query 34636 AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACA 34695 ||| || || |||||| ||||||| |||||||| ||||| || | ||||| || Sbjct 332 TCAATGGTATCCGAGCTCTCAACTTCCAACGTTATCGTCTTACCAGTCAGGGTTTTGACG 273 Query 34696 AAAATCTGCATG 34707 || ||||||||| Sbjct 272 AAGATCTGCATG 261 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||| | |||| || | ||| || || || ||||| ||||| | Sbjct 717 GCCACCCCTCAGACGGAGGACCAGGTGCAAGGTGGATTCTTTCTGGATGTTGTAATCGGC 658 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| |||| | || || || || || |||||||| ||||||||||| ||||| || || Sbjct 657 AAGGGTTCTACCATCCTCGAGCTGCTTTCCGGCAAAGATTAAACGCTGCTGGTCAGGGGG 598 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCA 34657 | ||||| ||||| |||| || | || || || ||| || || |||||| | Sbjct 597 AATGCCCTCTTTGTCCTGGATC-TTGGCCTTGACATTATCAATAGTATCCGAGCTCTCAA 539 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| ||| ||||| || || || | ||||| |||||||||||||| Sbjct 538 CTTCCAAGGTGATCGTCTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 490 Score = 105 bits (116), Expect = 4e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||| | || | ||| || ||| ||||| || || || ||||| | Sbjct 261 GCCACCCCTCAGACGGAGGACAAGATGCAGCGTGGATTCCTTCTGGATATTGTAATCGGC 202 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| ||||| | ||||| || || || || |||||||| | ||||||||||||||| || Sbjct 201 AAGGGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGG 142 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || ||||| || ||| ||||| || || | ||| ||||| |||||| | Sbjct 141 AATGCCTTCCTTATCCTGGAT-TTTTGCCTTTACATTGTCAATGGTGTCAGAGCTCTCGA 83 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 |||| | || || || || ||||| | ||||| || || || ||||| || Sbjct 82 CTTCAAGAGTGATGGTCTTGCCGGTAAGAGTTTTGACGAAGATTTGCATCTT 31 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| ||||| | || | ||| | || || || ||||| || || || | Sbjct 945 GCCACCTCTCAGACGGAGGACAAGATGCAAGGTAGATTCTTTCTGAATATTGTAGTCAGC 886 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| ||||| | ||||| || ||||| || ||||| || | ||||| ||||| || || Sbjct 885 AAGGGTTCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 826 Query 34599 CACTCCCTCCTTGTC-TGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCC 34656 | || |||||||| ||| ||||| | || || | || ||||| ||||||| Sbjct 825 GATGCCTTCCTTGTCCTGT-ATCTTA-GCCTTCACATTGTCGATGGTGTCCGAGCTCTCC 768 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||||| || || || ||||| |||| ||||| ||||| ||||||||| Sbjct 767 ACTTCCAAAGTAATGGTCTTACCTGTTAGGGTTTTGACAAAGATCTGCATG 717 >seq32362 Length=298 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | || || || ||||| || ||||||||||| | || |||||| Sbjct 223 AGACGCAAGACAAGGTGAAGTGTAGATTCCTTCTGGATGTTATAATCGGCCAGAGTTCGC 164 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || |||||||| |||||||| | | ||| || || || || | || ||| Sbjct 163 CCATCCTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGATCAGGTGGAATCCCTTCC 104 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | ||| ||| || ||| || || |||||| || |||| || Sbjct 103 TTGTC-CTGAATTTTCGCTTTTACGTTATCAATCGTATCGGAGCTCTCAACCTCCAGTGT 45 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || ||||| |||||||| |||||||| Sbjct 44 GATAGTCTTGCCTGTCAACGTCTTCACAAATATCTGCAT 6 >seq19645 Length=690 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | || || || |||||| || ||||| || || | ||| || || Sbjct 565 AGACGGAGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGG 506 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || | | ||| |||||||| || | |||||| Sbjct 505 CCATCCTCGAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGAATCCCCTCC 446 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| |||| || ||| || || ||||| ||||||||| || | ||| Sbjct 445 TTGTCCTGGATC-TTTGCCTTGACGTTATCGATCGTGTCGGAGCTCTCCACCTCGAGGGT 387 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| || || ||||| | ||| ||||| || ||||||||| Sbjct 386 TATGGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCATG 347 >seq20474 Length=655 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||| | || | ||||| ||| |||||| ||||||||||| || | Sbjct 97 GCCTCCCCTCAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGC 156 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 157 CAAGGTGCGGCCATCTTCGAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGG 216 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||||| |||| || | ||||| | |||||| || |||||| | Sbjct 217 GATTCCCTCCTTGTCTTGGATC-TTGGCCTTAACATTGTCAATTGTATCGGAGCTCTCTA 275 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || ||||| || | || ||||||||||||||||| Sbjct 276 CCTCGAGAGTGATTGTCTTACCAGTGAGGGTCTTCACAAAAATCTGCAT 324 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||| ||||| ||| |||||| || || || || || | | || || | |||||| Sbjct 344 ACCAGGTGGAGCGTGGACTCCTTCTGGATATTGTAGTCAGCCAAGGTGCGGCCATCTTCA 403 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || ||||| || || || | | ||| |||||||| || | |||||||||||| | Sbjct 404 AGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGG 463 Query 34618 ATCTTTTGTTTTA-ACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||||| |||| | || |||||||| |||||| || || | ||| || || || Sbjct 464 ATCTTGGACTTTACATTAT-CGATTGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTCTT 522 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 ||||| | || || || || || ||||| |||| Sbjct 523 GCCGGTAAGGGTCTTAACGAAGATTTGCATCTTGA 557 >seq25614 Length=477 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| ||||| | ||||||||| || || ||||||||||| || ||||| | Sbjct 43 GCCTCCTCTTAGACGAAGCACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAGC 102 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || | | || || || || ||||| || || || | | ||| ||||| || || Sbjct 103 CAAGGTCCTGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGG 162 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||| |||||||| |||| || | || ||| | ||| ||||| |||||| | Sbjct 163 AATTCCTTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCAATGGTGTCCGAGCTCTCAA 221 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||||| || || || || || |||| ||||| ||||| || |||||| Sbjct 222 CTTCCAATGTAATTGTCTTTCCAGTTAGTGTTTTTACAAAGATTTGCATG 271 >seq34564 Length=234 Score = 89.7 bits (98), Expect = 3e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 34526 TGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCT 34585 |||| || || | ||| || | | |||| || || || ||||| ||||| || | | || Sbjct 234 TGTTGTAGTCCGCAAGGGTCCTCCCGTCCTCGAGCTGCTTACCCGCAAAGATAAGCCTCT 175 Query 34586 GTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTG 34644 | |||||||| || | ||||||||||| |||| || | || ||| || || ||| Sbjct 174 GCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTATCGATGGTG 116 Query 34645 TCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGC 34704 || ||||||||| || | ||| || || || ||||| | || || ||||| |||||| Sbjct 115 TCCGAGCTCTCCACCTCGAGGGTGATGGTCTTCCCGGTGAGGGTCTTGACAAAGATCTGC 56 Query 34705 ATG 34707 ||| Sbjct 55 ATG 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314593280676587